Os03g0587100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expressed protein.
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Os03g0587100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Expressed protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.43 | 0.287 | 10.2 | -2.33 | 0.996 | -0.801 | 0.5 | 0.437 | -0.232 | 2.05 | 24.8 | 38 | -- | -- |
| 37.65 | 0.286 | 10.2 | -2.26 | 0.994 | -0.849 | 0.64 | -- | -0.214 | 2.04 | 24.52 | 38 | -- | -- |
| 38.12 | 0.288 | 10.2 | -2.38 | 0.99 | -0.759 | -- | 0.807 | -0.246 | 2.01 | 25.01 | 38 | -- | -- |
| 39.18 | 0.292 | 10.2 | -2.28 | 0.991 | -0.851 | -- | -- | -0.212 | 1.98 | 24.4 | 37 | -- | -- |
| 75.09 | 0.404 | 10.2 | -2.55 | -- | -1 | -- | 0.982 | -0.303 | -- | 30.38 | 1036 | -- | -- |
| 47.92 | 0.325 | 10.2 | -2.06 | 0.849 | -- | 0.662 | -- | -0.0596 | 2.18 | -- | -- | -- | -- |
| 49.54 | 0.33 | 10.2 | -2.08 | 0.849 | -- | -- | -- | -0.0632 | 2.1 | -- | -- | -- | -- |
| 75.98 | 0.406 | 10.2 | -2.35 | -- | -1.02 | -- | -- | -0.263 | -- | 29.47 | 1037 | -- | -- |
| 161.3 | 0.592 | 10.1 | -- | 0.692 | 0.52 | -- | -- | 0.212 | 1.5 | 42.03 | 205 | -- | -- |
| 92.69 | 0.45 | 10.1 | -2.05 | -- | -- | -- | -- | -0.043 | -- | -- | -- | -- | -- |
| 163.82 | 0.599 | 10.1 | -- | 0.81 | -- | -- | -- | 0.169 | 2.04 | -- | -- | -- | -- |
| 181.63 | 0.628 | 10.1 | -- | -- | 1.19 | -- | -- | 0.32 | -- | 58.69 | 15 | -- | -- |
| 203.21 | 0.665 | 10.1 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 2 | 37.40 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 3 | 37.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 5 | 37.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 6 | 37.42 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 7 | 37.43 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 8 | 37.44 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 9 | 37.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 11 | 37.44 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 37.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 15 | 37.45 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 16 | 37.46 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 20 | 37.49 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 27 | 37.57 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 28 | 37.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 30 | 37.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 32 | 37.61 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 36 | 37.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 19 |
| 53 | 37.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 73 | 37.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 79 | 37.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 91 | 37.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 228 | 38.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 270 | 38.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 317 | 38.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 327 | 38.42 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 334 | 38.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 348 | 38.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 353 | 38.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 361 | 38.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 399 | 38.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 416 | 38.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 421 | 38.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 458 | 38.61 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 468 | 38.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 469 | 38.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 484 | 38.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 543 | 38.70 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 642 | 38.83 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 652 | 38.85 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 687 | 38.88 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 738 | 38.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 904 | 39.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 916 | 39.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 918 | 39.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 927 | 39.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 939 | 39.09 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 948 | 39.10 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |