BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0587100 Os03g0587100|AK100380
(174 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G50575.1 | chr1:18728862-18730296 REVERSE LENGTH=307 251 2e-67
AT5G06300.1 | chr5:1922042-1925278 REVERSE LENGTH=218 49 1e-06
AT2G28305.1 | chr2:12081186-12084307 FORWARD LENGTH=214 49 1e-06
AT4G35190.1 | chr4:16746724-16748090 FORWARD LENGTH=229 48 2e-06
AT3G53450.1 | chr3:19812977-19815430 REVERSE LENGTH=216 48 2e-06
AT5G11950.1 | chr5:3855072-3856815 FORWARD LENGTH=217 47 4e-06
>AT1G50575.1 | chr1:18728862-18730296 REVERSE LENGTH=307
Length = 306
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 113/156 (72%), Positives = 136/156 (87%)
Query: 1 MDAATQGALEAGKPVGGFKIGKEAGEWTTSNFHPYLPSESYLTCRFFSARKHGLVDAAVR 60
MDA T+GALEA KPVGG KI KEAGEWT S FHPYLP ++Y TCRFFSARKHGLVDA +R
Sbjct: 133 MDAVTEGALEAEKPVGGIKIEKEAGEWTASKFHPYLPPQNYHTCRFFSARKHGLVDAVIR 192
Query: 61 NCPTDRTAIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLND 120
N +++TAIIALPGGIGTLDE+FE++ALIQLERIGS LPVPF+++NYD++YSKLL+F+
Sbjct: 193 NNVSEKTAIIALPGGIGTLDEMFEILALIQLERIGSALPVPFIVMNYDAFYSKLLEFIET 252
Query: 121 CEEWGTVAPGEVASLWKVCNGNHEALEYLAQFYNVP 156
CE GTV+ GEV++LWKVCN N EAL YLA+FY++P
Sbjct: 253 CENLGTVSKGEVSALWKVCNNNFEALTYLAEFYDLP 288
>AT5G06300.1 | chr5:1922042-1925278 REVERSE LENGTH=218
Length = 217
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 68 AIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTV 127
A IALPGG GTL+EL E++ QL P LLN D YY+ LL F++ + G +
Sbjct: 107 AFIALPGGYGTLEELLEVITWAQL----GIHRKPVGLLNVDGYYNSLLTFIDKAVDEGFI 162
Query: 128 AP 129
+P
Sbjct: 163 SP 164
>AT2G28305.1 | chr2:12081186-12084307 FORWARD LENGTH=214
Length = 213
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 68 AIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTV 127
A IALPGG GTL+EL E++ QL P LLN + YY+ LL F++ E G +
Sbjct: 106 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLNVEGYYNSLLSFIDKAVEEGFI 161
Query: 128 AP 129
+P
Sbjct: 162 SP 163
>AT4G35190.1 | chr4:16746724-16748090 FORWARD LENGTH=229
Length = 228
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 70 IALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTVAP 129
IALPGG GTL+EL E++A QL P LLN D YY+ LL F++ + G + P
Sbjct: 109 IALPGGYGTLEELLEVIAWAQL----GIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKP 164
Query: 130 GE 131
+
Sbjct: 165 SQ 166
>AT3G53450.1 | chr3:19812977-19815430 REVERSE LENGTH=216
Length = 215
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 68 AIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTV 127
A IALPGG GTL+EL E++ QL P LLN D YY+ LL F++ E G +
Sbjct: 112 AFIALPGGYGTLEELLEVITWAQL----GIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFI 167
Query: 128 A 128
+
Sbjct: 168 S 168
>AT5G11950.1 | chr5:3855072-3856815 FORWARD LENGTH=217
Length = 216
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 68 AIIALPGGIGTLDELFEMMALIQLERIGSTLPVPFLLLNYDSYYSKLLDFLNDCEEWGTV 127
A IALPGG GT++EL EM+ QL T+ LLN D YY+ LL + E G +
Sbjct: 108 AFIALPGGYGTMEELLEMITWSQLGIHKKTVG----LLNVDGYYNNLLALFDTGVEEGFI 163
Query: 128 APG 130
PG
Sbjct: 164 KPG 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,875,015
Number of extensions: 152163
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 6
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)