Os03g0586600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POLYPEPTIDE(RPABC6).
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Os03g0586600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POLYPEPTIDE(RPABC6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.55 | 0.327 | 10.7 | 0.0978 | 0.887 | 0.764 | -0.151 | -0.41 | -0.0729 | 6.67 | 45.26 | 405 | -- | -- |
| 48.82 | 0.325 | 10.7 | 0.085 | 0.895 | 0.744 | -0.226 | -- | -0.079 | 6.62 | 48.41 | 404 | -- | -- |
| 48.59 | 0.325 | 10.7 | 0.0928 | 0.895 | 0.755 | -- | -0.458 | -0.0713 | 6.65 | 46.11 | 402 | -- | -- |
| 49 | 0.326 | 10.7 | 0.0836 | 0.897 | 0.739 | -- | -- | -0.0791 | 6.6 | 47.29 | 402 | -- | -- |
| 53.27 | 0.34 | 10.7 | 0.125 | -- | 1.52 | -- | -0.752 | -0.0593 | -- | 6.763 | 684 | -- | -- |
| 55.03 | 0.348 | 10.7 | 0.0392 | 1.31 | -- | -0.141 | -- | -0.148 | 5.54 | -- | -- | -- | -- |
| 55.07 | 0.348 | 10.7 | 0.0387 | 1.31 | -- | -- | -- | -0.147 | 5.54 | -- | -- | -- | -- |
| 53.19 | 0.34 | 10.7 | 0.0865 | -- | 1.59 | -- | -- | -0.0662 | -- | 6.72 | 693 | -- | -- |
| 49.18 | 0.327 | 10.7 | -- | 0.906 | 0.726 | -- | -- | -0.0874 | 6.55 | 50 | 403 | -- | -- |
| 143.89 | 0.561 | 10.7 | 0.0816 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 55.11 | 0.347 | 10.7 | -- | 1.31 | -- | -- | -- | -0.152 | 5.54 | -- | -- | -- | -- |
| 53.38 | 0.34 | 10.7 | -- | -- | 1.58 | -- | -- | -0.0751 | -- | 7.293 | 689 | -- | -- |
| 144.07 | 0.56 | 10.7 | -- | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.12 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 3 | 45.30 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 10 | 45.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 13 | 45.81 | radiation | 1.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 15 | 45.84 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 7 |
| 18 | 45.84 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 22 | 45.88 | radiation | 30.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 24 | 45.89 | radiation | 10.0 | 270 | < th | dose independent | sin | 19 | NA |
| 25 | 45.89 | radiation | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 31 | 45.92 | radiation | 20.0 | 270 | < th | dose independent | sin | 16 | NA |
| 32 | 45.92 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 49 | 45.95 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 51 | 45.96 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 57 | 46.00 | radiation | 30.0 | 270 | < th | dose independent | sin | 14 | NA |
| 78 | 46.09 | radiation | 20.0 | 270 | > th | dose independent | sin | 16 | NA |
| 85 | 46.13 | radiation | 20.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 124 | 46.20 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 128 | 46.23 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 15 |
| 132 | 46.24 | radiation | 30.0 | 270 | > th | dose independent | sin | 14 | NA |
| 137 | 46.27 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 165 | 46.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 6 |
| 176 | 46.46 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 15 |
| 193 | 46.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 217 | 46.58 | wind | 1.0 | 30 | > th | dose independent | rect. | 5 | 9 |
| 241 | 46.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 15 |
| 242 | 46.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 244 | 46.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 247 | 46.67 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 9 |
| 248 | 46.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 257 | 46.67 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 273 | 46.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 9 |
| 274 | 46.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 9 |
| 275 | 46.69 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 9 |
| 277 | 46.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 14 | 15 |
| 316 | 46.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 401 | 46.90 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 6 |
| 447 | 46.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 450 | 46.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 468 | 46.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 476 | 47.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 480 | 47.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 496 | 47.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 497 | 47.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 498 | 47.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 499 | 47.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 503 | 47.12 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 9 |
| 519 | 47.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 525 | 47.21 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 9 |
| 538 | 47.26 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 19 |
| 548 | 47.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 552 | 47.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 19 |
| 556 | 47.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 563 | 47.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 565 | 47.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 567 | 47.37 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 6 |
| 568 | 47.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 571 | 47.38 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 583 | 47.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 586 | 47.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 607 | 47.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 5 |
| 622 | 47.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 17 |
| 626 | 47.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 644 | 47.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 651 | 47.52 | temperature | 25.0 | 30 | > th | dose independent | rect. | 14 | 5 |
| 719 | 47.56 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 15 |
| 728 | 47.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 740 | 47.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 753 | 47.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 766 | 47.65 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 5 |
| 817 | 47.71 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 838 | 47.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 858 | 47.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 5 |
| 860 | 47.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 866 | 47.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 888 | 47.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 894 | 47.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 19 |
| 927 | 47.85 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 5 |
| 969 | 47.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 5 |
| 970 | 47.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |