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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0583700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteasome maturation factor UMP1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0292) R2 : 0.00759
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.115 (0.0616) R2dN8 : 0.0098 R2N8 : 0.00759
σ : 0.551
deviance : 139.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.62 0.543 3.07 -0.289 0.0939 -0.383 -0.151 1.61 0.0802 12.3 1.027 12 -- --
135.87 0.543 3.05 -0.237 0.089 -0.272 -0.0184 -- 0.0958 12.3 1.2 16 -- --
133.55 0.542 3.07 -0.303 0.0956 -0.352 -- 1.53 0.0799 12.6 1.027 12 -- --
135.73 0.543 3.05 -0.244 0.0967 -0.301 -- -- 0.0939 12.3 1.045 16 -- --
134.09 0.542 3.07 -0.302 -- -0.322 -- 1.5 0.0782 -- 1.027 12 -- --
137.54 0.55 3.05 -0.195 0.084 -- -0.288 -- 0.0911 7.84 -- -- -- --
137.75 0.55 3.05 -0.202 0.0851 -- -- -- 0.092 8.84 -- -- -- --
136.25 0.544 3.05 -0.237 -- -0.272 -- -- 0.0935 -- 1.062 16 -- --
137.2 0.546 3.05 -- 0.0884 -0.27 -- -- 0.119 12.4 1.1 16 -- --
138.16 0.549 3.05 -0.201 -- -- -- -- 0.0926 -- -- -- -- --
138.82 0.551 3.05 -- 0.0848 -- -- -- 0.114 9.02 -- -- -- --
137.71 0.547 3.05 -- -- -0.241 -- -- 0.119 -- 1.03 16 -- --
139.23 0.551 3.05 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 125.24 wind 1.0 10 < th dose dependent rect. 2 1
3 125.64 atmosphere 1005.0 10 > th dose independent rect. 2 1
4 125.72 wind 3.0 10 < th dose independent rect. 2 1
6 125.79 wind 5.0 10 < th dose dependent rect. 2 1
9 125.87 radiation 1.0 14400 < th dose dependent rect. 3 1
11 125.93 atmosphere 1000.0 10 > th dose dependent rect. 2 1
18 126.05 temperature 25.0 10 < th dose independent rect. 2 1
19 126.05 temperature 30.0 30 < th dose dependent rect. 2 1
24 126.08 temperature 10.0 10 > th dose dependent rect. 2 1
31 126.10 temperature 10.0 10 > th dose independent rect. 2 1
34 126.10 humidity 50.0 10 > th dose independent rect. 2 1
38 126.10 atmosphere 1010.0 10 < th dose independent rect. 2 1
40 126.10 radiation 1.0 10 < th dose independent rect. 2 1
45 126.10 precipitation 0.1 10 < th dose independent rect. 2 1
46 126.10 temperature 10.0 10 > th dose independent rect. 3 23
47 126.10 radiation 1.0 10 < th dose dependent rect. 2 1
52 126.10 precipitation 0.1 10 < th dose dependent rect. 2 1
81 126.16 atmosphere 1015.0 30 < th dose dependent rect. 2 1
84 126.21 atmosphere 995.0 10 > th dose independent rect. 3 23
85 126.21 humidity 50.0 30 > th dose dependent rect. 2 1
101 126.30 wind 9.0 1440 < th dose independent rect. 3 1
102 126.30 temperature 10.0 1440 > th dose independent rect. 3 1
105 126.30 temperature 30.0 1440 < th dose independent rect. 3 1
109 126.30 humidity 50.0 1440 > th dose independent rect. 3 1
118 126.30 atmosphere 995.0 1440 > th dose independent rect. 3 1
119 126.30 radiation 1.0 1440 < th dose independent rect. 3 1
139 126.30 temperature 10.0 1440 > th dose independent rect. 4 23
152 126.37 humidity 90.0 30 > th dose independent rect. 2 1
157 126.45 wind 1.0 30 > th dose independent rect. 2 1
170 126.73 wind 1.0 30 < th dose independent rect. 22 5
171 126.74 wind 1.0 30 < th dose independent rect. 17 10
174 126.77 precipitation 0.1 30 < th dose independent rect. 3 23
175 126.77 precipitation 0.1 30 < th dose dependent rect. 3 23
183 126.90 radiation 1.0 10 > th dose dependent rect. 18 1
202 127.41 wind 1.0 30 < th dose independent rect. 10 17
214 127.52 wind 1.0 30 < th dose dependent rect. 23 4
221 127.60 wind 1.0 30 < th dose dependent rect. 17 10
235 128.04 humidity 50.0 10 > th dose independent rect. 3 23
244 128.49 wind 1.0 30 < th dose dependent rect. 10 17
247 128.62 wind 1.0 30 < th dose independent rect. 7 20
256 128.83 wind 9.0 30 < th dose independent rect. 3 23
262 129.22 humidity 60.0 10 < th dose dependent rect. 18 1
282 129.55 radiation 1.0 30 < th dose independent rect. 3 23
295 129.89 radiation 1.0 30 < th dose dependent rect. 3 23
299 130.18 humidity 50.0 30 > th dose dependent rect. 3 23
312 130.44 atmosphere 1015.0 30 < th dose independent rect. 3 23
334 130.90 humidity 80.0 90 < th dose dependent rect. 6 1
347 131.04 wind 1.0 10 > th dose independent sin 16 NA
348 131.08 wind 1.0 10 > th dose independent rect. 11 23
354 131.20 humidity 80.0 90 < th dose independent rect. 6 1
360 131.24 humidity 90.0 90 < th dose independent rect. 1 2
387 131.40 wind 9.0 90 < th dose independent rect. 15 12
389 131.43 wind 9.0 720 < th dose independent rect. 20 7
395 131.52 precipitation 0.1 720 < th dose independent rect. 20 7
397 131.52 precipitation 0.1 720 < th dose dependent rect. 20 7
405 131.60 humidity 50.0 90 > th dose independent rect. 3 12
408 131.64 temperature 10.0 720 > th dose independent rect. 8 7
409 131.64 atmosphere 1015.0 720 < th dose independent rect. 8 7
413 131.64 temperature 10.0 720 > th dose independent rect. 15 17
414 131.66 temperature 10.0 720 > th dose independent rect. 20 7
415 131.66 temperature 30.0 720 < th dose independent rect. 20 7
416 131.66 humidity 50.0 720 > th dose independent rect. 20 7
419 131.66 atmosphere 995.0 720 > th dose independent rect. 20 7
420 131.66 radiation 1.0 720 < th dose independent rect. 20 7
425 131.66 temperature 10.0 720 > th dose independent rect. 3 17
426 131.66 radiation 1.0 720 < th dose dependent rect. 20 7
432 131.70 temperature 30.0 30 < th dose independent rect. 3 23
433 131.71 radiation 40.0 90 < th dose independent rect. 15 12
439 131.79 temperature 10.0 90 > th dose independent rect. 3 12
440 131.79 temperature 10.0 90 > th dose independent rect. 15 12
441 131.79 atmosphere 1015.0 90 < th dose independent rect. 3 12
444 131.81 precipitation 0.1 720 < th dose independent rect. 8 7
445 131.81 precipitation 0.1 90 < th dose independent rect. 15 12
446 131.81 precipitation 0.1 720 < th dose dependent rect. 8 7
447 131.81 precipitation 0.1 90 < th dose dependent rect. 15 12
449 131.84 atmosphere 995.0 90 > th dose independent rect. 3 12
451 131.87 wind 1.0 30 > th dose independent rect. 3 23
458 131.90 precipitation 0.1 90 < th dose independent rect. 3 12
459 131.90 precipitation 0.1 90 < th dose dependent rect. 3 12
483 131.92 radiation 1.0 10 > th dose independent rect. 18 1
484 131.92 wind 9.0 720 < th dose independent rect. 15 2
498 131.93 atmosphere 995.0 720 > th dose independent rect. 8 7
509 132.03 wind 9.0 90 < th dose independent rect. 3 12
512 132.05 atmosphere 995.0 90 > th dose independent rect. 15 12
517 132.07 humidity 50.0 720 > th dose dependent rect. 3 2
519 132.08 humidity 50.0 720 > th dose independent rect. 8 7
520 132.10 precipitation 0.1 720 < th dose independent rect. 15 17
521 132.10 precipitation 0.1 720 < th dose dependent rect. 15 17
533 132.16 wind 9.0 30 < th dose dependent rect. 16 11
540 132.21 wind 1.0 10 < th dose independent sin 17 NA
541 132.21 temperature 15.0 720 > th dose independent rect. 15 2
550 132.24 precipitation 0.1 720 < th dose independent rect. 15 2
551 132.24 precipitation 0.1 720 < th dose dependent rect. 15 2
553 132.25 atmosphere 1015.0 720 < th dose independent rect. 15 2
555 132.25 temperature 10.0 720 > th dose independent rect. 17 22
561 132.28 radiation 1.0 720 > th dose independent rect. 15 1
581 132.31 wind 1.0 10 > th dose independent rect. 19 12
584 132.32 wind 9.0 720 < th dose independent rect. 15 17
587 132.32 humidity 50.0 90 > th dose dependent rect. 3 12
604 132.38 atmosphere 995.0 720 > th dose independent rect. 17 22
612 132.44 humidity 80.0 90 < th dose dependent rect. 22 10
616 132.47 temperature 25.0 30 > th dose dependent rect. 10 1
619 132.49 precipitation 0.1 720 < th dose independent rect. 5 22
620 132.49 precipitation 0.1 720 < th dose dependent rect. 5 22
621 132.50 wind 1.0 30 < th dose independent rect. 10 1
622 132.50 temperature 10.0 1440 > th dose independent rect. 11 1
626 132.50 atmosphere 995.0 1440 > th dose independent rect. 11 1
629 132.50 precipitation 0.1 1440 < th dose independent rect. 11 1
631 132.50 temperature 10.0 1440 > th dose independent rect. 12 23
634 132.50 wind 1.0 30 < th dose dependent rect. 10 1
635 132.50 precipitation 0.1 1440 < th dose dependent rect. 11 1
641 132.51 atmosphere 1005.0 30 > th dose dependent rect. 10 1
643 132.52 temperature 25.0 30 > th dose independent rect. 10 1
646 132.54 humidity 90.0 10 > th dose independent rect. 24 3
654 132.56 humidity 70.0 30 < th dose independent rect. 10 1
658 132.57 humidity 80.0 90 < th dose independent rect. 22 10
662 132.58 wind 1.0 720 > th dose independent rect. 15 2
665 132.59 atmosphere 1005.0 30 > th dose independent rect. 10 1
671 132.60 radiation 20.0 30 > th dose independent rect. 10 1
678 132.61 temperature 25.0 10 < th dose independent rect. 24 3
681 132.61 humidity 90.0 30 < th dose dependent rect. 10 1
682 132.61 atmosphere 1005.0 30 > th dose dependent rect. 7 1
707 132.68 humidity 60.0 30 > th dose independent rect. 10 1
722 132.68 precipitation 0.1 720 < th dose independent rect. 3 2
724 132.68 atmosphere 1015.0 720 < th dose independent rect. 3 17
731 132.68 precipitation 0.1 720 < th dose dependent rect. 3 2
735 132.69 wind 1.0 10 > th dose independent rect. 8 23
740 132.73 wind 5.0 30 < th dose independent rect. 10 1
742 132.73 radiation 40.0 30 < th dose independent rect. 10 1
743 132.73 temperature 10.0 720 > th dose dependent rect. 15 1
747 132.74 wind 9.0 30 < th dose dependent rect. 10 1
749 132.75 temperature 10.0 30 > th dose independent rect. 10 1
753 132.75 atmosphere 995.0 30 > th dose independent rect. 10 1
754 132.75 atmosphere 1015.0 30 < th dose independent rect. 10 1
755 132.75 radiation 1.0 30 > th dose independent rect. 10 1
756 132.75 precipitation 0.1 30 < th dose independent rect. 10 1
757 132.75 temperature 10.0 30 > th dose independent rect. 11 23
759 132.75 precipitation 0.1 30 < th dose dependent rect. 10 1
763 132.77 wind 1.0 30 > th dose independent rect. 10 1
770 132.78 temperature 30.0 30 < th dose independent rect. 10 1
774 132.78 radiation 1.0 30 > th dose dependent rect. 10 1
784 132.80 humidity 70.0 90 > th dose dependent rect. 3 8
785 132.81 radiation 30.0 30 < th dose independent rect. 3 7
823 132.84 humidity 70.0 90 > th dose independent rect. 3 6
825 132.85 atmosphere 995.0 720 > th dose independent rect. 15 2
876 132.96 wind 1.0 10 > th dose independent rect. 12 19
880 132.97 wind 9.0 30 < th dose dependent rect. 10 17
890 133.00 humidity 50.0 30 > th dose independent rect. 16 11
963 133.04 atmosphere 995.0 720 > th dose independent rect. 3 17
965 133.04 radiation 40.0 30 < th dose dependent rect. 10 1
975 133.06 wind 9.0 720 < th dose independent rect. 8 7
1000 133.08 atmosphere 1015.0 720 < th dose independent rect. 3 2