BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0583700 Os03g0583700|Os03g0583700
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67250.1  | chr1:25163808-25164967 REVERSE LENGTH=142          122   1e-28
AT5G38650.1  | chr5:15471208-15472699 REVERSE LENGTH=142          117   2e-27

>AT1G67250.1 | chr1:25163808-25164967 REVERSE LENGTH=142
          Length = 141

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 2/130 (1%)

Query: 1   MASGSIVKKEVGE-NHDVLLFGVNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGAEAIY 59
           M S   +  E+G   +D L FG++  VK ++   HP++++   E K     KR      Y
Sbjct: 1   MESEKKIAHEIGGVKNDALRFGLHG-VKSNIIGSHPLESSYESEKKSKEALKRTVIAHAY 59

Query: 60  GSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAP 119
           G+A  ++ D+D QILS+FQRPPG +PSSMLG E  TG++DDFGFEDYLN P+DS++F   
Sbjct: 60  GTALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPV 119

Query: 120 DMHHGMEVRL 129
           D HHGMEVRL
Sbjct: 120 DFHHGMEVRL 129



>AT5G38650.1 | chr5:15471208-15472699 REVERSE LENGTH=142
          Length = 141

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 1   MASGSIVKKEVG-ENHDVLLFGVNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGAEAIY 59
           M S   +  E+G   +D L FG++  VK D+   HP++       +   + KR      Y
Sbjct: 1   MESQKKIAHEIGGMKNDALRFGLHG-VKSDILRSHPLETAYESGKQSQEEMKRRVITHTY 59

Query: 60  GSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAP 119
           G+A  ++ DLD QILS+FQRPPG +PSSMLG E  TG+LD+FGFEDYLN P++S++    
Sbjct: 60  GAALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPV 119

Query: 120 DMHHGMEVRL 129
           D HHGMEVRL
Sbjct: 120 DFHHGMEVRL 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,915,292
Number of extensions: 162762
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)