Os03g0566600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Methyltransferase FkbM domain containing protein.
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Os03g0566600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Methyltransferase FkbM domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.32 | 0.564 | 4.24 | 0.209 | 1.05 | 1.21 | -0.357 | 2.82 | 0.073 | 18.9 | 22.56 | 221 | -- | -- |
| 147.86 | 0.566 | 4.29 | -0.287 | 1.07 | 1.47 | 0.0247 | -- | -0.0506 | 19.2 | 22.91 | 158 | -- | -- |
| 144.45 | 0.56 | 4.23 | 0.241 | 1.06 | 1.2 | -- | 2.89 | 0.0801 | 18.9 | 22.56 | 191 | -- | -- |
| 147.8 | 0.566 | 4.29 | -0.274 | 1.05 | 1.5 | -- | -- | -0.0702 | 19.3 | 22.92 | 155 | -- | -- |
| 177.18 | 0.62 | 4.27 | -0.319 | -- | 2.09 | -- | 0.505 | -0.102 | -- | 23.9 | 384 | -- | -- |
| 185.19 | 0.638 | 4.25 | 0.0345 | 1.54 | -- | 0.559 | -- | 0.145 | 18.1 | -- | -- | -- | -- |
| 185.96 | 0.639 | 4.25 | 0.029 | 1.54 | -- | -- | -- | 0.147 | 18.1 | -- | -- | -- | -- |
| 177.25 | 0.62 | 4.28 | -0.392 | -- | 2.14 | -- | -- | -0.12 | -- | 23.96 | 384 | -- | -- |
| 149.63 | 0.57 | 4.28 | -- | 1.07 | 1.42 | -- | -- | -0.0248 | 19.2 | 23.1 | 157 | -- | -- |
| 309.4 | 0.822 | 4.22 | -0.0151 | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
| 185.98 | 0.638 | 4.25 | -- | 1.54 | -- | -- | -- | 0.144 | 18.1 | -- | -- | -- | -- |
| 181.14 | 0.627 | 4.26 | -- | -- | 2.07 | -- | -- | -0.0633 | -- | 24.08 | 384 | -- | -- |
| 309.41 | 0.821 | 4.22 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 34 | 145.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 35 | 145.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 39 | 146.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 49 | 146.44 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 59 | 146.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 64 | 147.06 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 75 | 147.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 111 | 147.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 112 | 147.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 129 | 148.21 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 134 | 148.31 | temperature | 20 | 10 | > th | dose dependent | sin | 19 | NA |
| 139 | 148.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 206 | 149.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 295 | 149.41 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 430 | 150.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 469 | 150.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 479 | 150.27 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 530 | 150.54 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 16 |
| 623 | 150.99 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 16 |
| 644 | 151.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 712 | 151.35 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 752 | 151.49 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 808 | 151.70 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 865 | 151.92 | temperature | 25 | 90 | < th | dose independent | sin | 20 | NA |
| 940 | 152.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 946 | 152.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 954 | 152.38 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 971 | 152.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |