BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0566600 Os03g0566600|AK063379
         (325 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26680.1  | chr2:11344003-11345288 REVERSE LENGTH=320          387   e-108

>AT2G26680.1 | chr2:11344003-11345288 REVERSE LENGTH=320
          Length = 319

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 176/262 (67%), Positives = 217/262 (82%)

Query: 63  VRPFDCYASQQASPVFASLVEGVPHPFFYSLADMGALPDHPHKNIARILKGKRFRKPDIS 122
           + PFDC+   Q+ P+ A++VE + +PF YSLAD+G LP+ PHKNI R+LKGK FRKPDIS
Sbjct: 57  IPPFDCFKCPQSKPIIANVVENLKYPFVYSLADLGNLPEKPHKNIVRLLKGKPFRKPDIS 116

Query: 123 ETIQQLLGGKVGIGSRGVVVDVGANVGMASFAAAVMGFRVVAFEPVLENLQRICDGVYLN 182
            TIQ++L      G  G+VVDVGANVGMASFAAAVMGF+V+AFEPV ENLQRICDG++ N
Sbjct: 117 ATIQEVLDSMRASGKNGIVVDVGANVGMASFAAAVMGFKVLAFEPVFENLQRICDGIWFN 176

Query: 183 RVQDQVVVYHAAASDRVGNITMHKVIGRLDNSAISATGAKLAFKANEEIAVEVATIPLDE 242
           RV   V V+ AAASDR G+IT HK++GRLDNSA+S  GA+LAFK+N+EIAV+V +IPLD+
Sbjct: 177 RVASLVTVFEAAASDRTGDITFHKLVGRLDNSAVSEVGARLAFKSNKEIAVQVKSIPLDK 236

Query: 243 VILDAERVVLIKIDVQGWEYHVLRGASKLLSRRKGDAPYLIYEEDERLLQASNSSAREIR 302
           +I  ++ V+LIKIDVQGWEYHVL+GA KLLS +  +APYLIYEEDERLL ASNSS++EIR
Sbjct: 237 LIPPSQPVLLIKIDVQGWEYHVLKGAKKLLSGKPAEAPYLIYEEDERLLTASNSSSKEIR 296

Query: 303 AFLSSVGYNHCTRHGTDAHCTK 324
            FL SVGY+ C++HGTDAHCTK
Sbjct: 297 DFLKSVGYSKCSQHGTDAHCTK 318



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,466,446
Number of extensions: 212024
Number of successful extensions: 531
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)