Os03g0564200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF952 family protein.
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Os03g0564200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF952 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.13 | 0.865 | 6.13 | 3.75 | 1.99 | 1.74 | 0.0852 | -2.64 | 1.48 | 21.7 | 6.76 | 1452 | -- | -- |
| 348.45 | 0.869 | 6.15 | 3.52 | 2.05 | 1.86 | -0.0841 | -- | 1.4 | 21.8 | 4.927 | 1444 | -- | -- |
| 339.01 | 0.858 | 6.12 | 3.76 | 1.97 | 1.78 | -- | -2.65 | 1.48 | 21.7 | 6.437 | 1455 | -- | -- |
| 348.4 | 0.869 | 6.15 | 3.52 | 2.02 | 1.88 | -- | -- | 1.4 | 21.8 | 5.01 | 1450 | -- | -- |
| 467.19 | 1.01 | 6.16 | 3.24 | -- | 1.4 | -- | -0.792 | 1.11 | -- | 6.437 | 1455 | -- | -- |
| 410.13 | 0.949 | 6.22 | 3.25 | 2.08 | -- | -0.338 | -- | 1.07 | 21.8 | -- | -- | -- | -- |
| 410.56 | 0.949 | 6.22 | 3.26 | 2.08 | -- | -- | -- | 1.07 | 21.8 | -- | -- | -- | -- |
| 471.04 | 1.02 | 6.16 | 3.25 | -- | 1.4 | -- | -- | 1.11 | -- | 6.437 | 1455 | -- | -- |
| 643.58 | 1.18 | 6.2 | -- | 2.15 | 1.66 | -- | -- | 1.04 | 21.5 | 9.997 | 2925 | -- | -- |
| 669.17 | 1.21 | 6.17 | 3.28 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 691.12 | 1.23 | 6.31 | -- | 2.09 | -- | -- | -- | 0.708 | 21.9 | -- | -- | -- | -- |
| 749.09 | 1.28 | 6.24 | -- | -- | 1.42 | -- | -- | 0.746 | -- | 6.437 | 1455 | -- | -- |
| 953.49 | 1.44 | 6.25 | -- | -- | -- | -- | -- | 0.705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 335.40 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 3 | 335.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 14 | 338.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 15 | 338.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 21 | 338.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 135 | 341.48 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 138 | 341.77 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 3 |
| 139 | 341.86 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 3 |
| 167 | 342.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 197 | 343.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 199 | 343.29 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 213 | 343.80 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 226 | 343.88 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 280 | 344.63 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 281 | 344.63 | radiation | 10 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 349 | 344.65 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 351 | 344.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 376 | 344.98 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 388 | 344.99 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 477 | 346.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 479 | 346.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 483 | 346.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 485 | 346.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 497 | 346.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 517 | 346.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 520 | 346.13 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 535 | 346.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 536 | 346.37 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 593 | 346.84 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 597 | 346.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 677 | 347.46 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 687 | 347.48 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 761 | 347.79 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 781 | 348.17 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 833 | 348.47 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 910 | 348.88 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 912 | 348.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 950 | 349.08 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 968 | 349.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |