BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0564200 Os03g0564200|AK064634
         (119 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01897.1  | chr4:820487-821466 REVERSE LENGTH=123              132   3e-32

>AT4G01897.1 | chr4:820487-821466 REVERSE LENGTH=123
          Length = 122

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 2/113 (1%)

Query: 1   ISTADEWAQLQRTGGTLGGDLDRSTGCIHLSDLSQVRKTLKNFFLG-RNDLYLLQVDTSK 59
           IST  EW + ++ G + G ++D+ST   HLS L QV+ TLKNFF+  +  LYLLQVD  K
Sbjct: 10  ISTEQEWEEFKKNGSSYGAEIDKSTCYYHLSKLDQVQLTLKNFFVDVKEYLYLLQVDPKK 69

Query: 60  LSDGLVYEAADDSNYFPHFYGPGRSFAPLQLDAVIKEAEKIVLVNNDFTCSLL 112
           L DGL+YEA D+ N FPHFYGP ++F PL LD+V+K AEK+  +N +FTCS L
Sbjct: 70  LGDGLIYEAVDEVNSFPHFYGPDKTFVPLPLDSVVK-AEKLTFINGNFTCSFL 121



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,757,301
Number of extensions: 105187
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)