Os03g0452300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S5, bacterial and chloroplast family protein.
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Os03g0452300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S5, bacterial and chloroplast family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.88 | 0.384 | 13.9 | 1.25 | 1.48 | 0.562 | 0.277 | 4.25 | -0.133 | 22.3 | 6.704 | 11359 | -- | -- |
| 80.21 | 0.417 | 14.1 | 0.406 | 1.59 | 0.415 | 0.646 | -- | -0.486 | 22.1 | 27.51 | 11856 | -- | -- |
| 64.88 | 0.375 | 13.8 | 1 | 1.46 | 0.848 | -- | 4.56 | -0.164 | 22.3 | 12.21 | 21209 | -- | -- |
| 75.06 | 0.404 | 14.1 | 0.243 | 1.5 | 0.675 | -- | -- | -0.599 | 22.3 | 30.6 | 19060 | -- | -- |
| 194.79 | 0.65 | 13.8 | 0.879 | -- | 1.05 | -- | 4.65 | -0.216 | -- | 14.45 | 22461 | -- | -- |
| 84.02 | 0.43 | 14 | 0.445 | 1.49 | -- | 0.302 | -- | -0.343 | 22.4 | -- | -- | -- | -- |
| 84.38 | 0.43 | 14 | 0.433 | 1.49 | -- | -- | -- | -0.344 | 22.4 | -- | -- | -- | -- |
| 201.29 | 0.664 | 14 | 0.66 | -- | -1.11 | -- | -- | -0.191 | -- | 14.45 | 22461 | -- | -- |
| 75.58 | 0.405 | 14.1 | -- | 1.47 | 0.663 | -- | -- | -0.601 | 22.3 | 31.08 | 20002 | -- | -- |
| 219.18 | 0.692 | 14 | 0.457 | -- | -- | -- | -- | -0.339 | -- | -- | -- | -- | -- |
| 89.33 | 0.442 | 14 | -- | 1.49 | -- | -- | -- | -0.392 | 22.4 | -- | -- | -- | -- |
| 204.86 | 0.667 | 14.1 | -- | -- | 0.746 | -- | -- | -0.604 | -- | 31.68 | 20998 | -- | -- |
| 224.68 | 0.7 | 14 | -- | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 2 | 63.32 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 17 | 63.54 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 19 |
| 18 | 63.55 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 94 | 63.94 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 112 | 64.03 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 115 | 64.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 116 | 64.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 117 | 64.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 122 | 64.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 135 | 64.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 136 | 64.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 137 | 64.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 155 | 64.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 164 | 64.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 191 | 64.27 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 286 | 64.61 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 295 | 64.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 334 | 64.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 338 | 64.79 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 362 | 64.87 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 387 | 64.93 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 22 |
| 392 | 64.95 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 445 | 65.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 451 | 65.10 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 474 | 65.18 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 478 | 65.19 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 481 | 65.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 504 | 65.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 505 | 65.28 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 526 | 65.33 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 530 | 65.34 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 531 | 65.34 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 533 | 65.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 550 | 65.38 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 555 | 65.39 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 558 | 65.39 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 564 | 65.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 575 | 65.44 | humidity | 90.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 578 | 65.44 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 657 | 65.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 658 | 65.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 671 | 65.66 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 725 | 65.76 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 884 | 65.98 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 895 | 65.99 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 921 | 66.03 | humidity | 90.0 | 14400 | < th | dose independent | no | NA | NA |
| 925 | 66.04 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 947 | 66.05 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 949 | 66.06 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 23 |