Os03g0448700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Interferon-related developmental regulator domain containing protein.
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Os03g0448700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Interferon-related developmental regulator domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.51 | 0.303 | 8.89 | -0.902 | 0.676 | -0.973 | -0.697 | 0.0186 | 0.332 | 2.01 | 20.96 | 26 | -- | -- |
| 41.5 | 0.3 | 8.89 | -0.907 | 0.677 | -0.971 | -0.701 | -- | 0.33 | 2 | 21.1 | 26 | -- | -- |
| 42.74 | 0.304 | 8.87 | -0.756 | 0.683 | -0.992 | -- | 0.821 | 0.37 | 2.04 | 20.86 | 25 | -- | -- |
| 43.36 | 0.309 | 8.89 | -0.9 | 0.69 | -0.92 | -- | -- | 0.324 | 2.14 | 21.1 | 26 | -- | -- |
| 60.65 | 0.365 | 8.83 | -0.561 | -- | -1.63 | -- | 1.12 | 0.5 | -- | 20.99 | 24 | -- | -- |
| 55.63 | 0.35 | 8.92 | -1.1 | 1.04 | -- | -0.483 | -- | 0.167 | 2.23 | -- | -- | -- | -- |
| 56.49 | 0.352 | 8.92 | -1.09 | 1.04 | -- | -- | -- | 0.17 | 2.24 | -- | -- | -- | -- |
| 61.81 | 0.368 | 8.86 | -0.749 | -- | -1.57 | -- | -- | 0.443 | -- | 21.1 | 26 | -- | -- |
| 62.84 | 0.369 | 8.86 | -- | 0.605 | -1.17 | -- | -- | 0.463 | 1.61 | 20.37 | 55 | -- | -- |
| 120.77 | 0.514 | 8.91 | -1.04 | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
| 87.72 | 0.438 | 8.89 | -- | 1.02 | -- | -- | -- | 0.291 | 2.22 | -- | -- | -- | -- |
| 75.85 | 0.406 | 8.83 | -- | -- | -1.74 | -- | -- | 0.555 | -- | 20.71 | 22 | -- | -- |
| 149.56 | 0.571 | 8.89 | -- | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 2 | 41.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 23 |
| 4 | 41.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 41.74 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 19 | 42.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 38 | 42.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 41 | 42.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 67 | 43.02 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 68 | 43.03 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |
| 71 | 43.05 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 9 |
| 76 | 43.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 77 | 43.10 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 81 | 43.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 82 | 43.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 86 | 43.15 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 21 |
| 89 | 43.16 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 5 |
| 93 | 43.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 99 | 43.21 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 7 |
| 107 | 43.24 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 14 |
| 108 | 43.24 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 116 | 43.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 118 | 43.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 21 |
| 120 | 43.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 121 | 43.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 126 | 43.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 139 | 43.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 146 | 43.32 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 148 | 43.32 | temperature | 25 | 10 | > th | dose dependent | sin | 18 | NA |
| 154 | 43.33 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 155 | 43.33 | temperature | 30 | 90 | < th | dose independent | sin | 21 | NA |
| 171 | 43.35 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 9 |
| 186 | 43.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 217 | 43.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 225 | 43.39 | temperature | 30 | 720 | < th | dose independent | sin | 2 | NA |
| 249 | 43.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 261 | 43.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 309 | 43.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 344 | 43.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 18 |
| 354 | 43.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 382 | 43.50 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 15 |
| 463 | 43.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 579 | 43.61 | temperature | 30 | 90 | > th | dose independent | sin | 21 | NA |
| 594 | 43.62 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 689 | 43.69 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 697 | 43.70 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 712 | 43.71 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 23 |
| 720 | 43.72 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 760 | 43.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 20 |
| 776 | 43.75 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 788 | 43.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 792 | 43.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 830 | 43.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 20 |
| 846 | 43.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 861 | 43.80 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 869 | 43.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 877 | 43.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 883 | 43.81 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 23 |
| 902 | 43.83 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 911 | 43.83 | humidity | 50 | 10 | > th | dose dependent | sin | 19 | NA |
| 952 | 43.85 | temperature | 30 | 90 | < th | dose independent | no | NA | NA |
| 967 | 43.86 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 968 | 43.86 | radiation | 1 | 4320 | < th | dose independent | sin | 14 | NA |
| 969 | 43.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |