Os03g0441000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription initiation factor TFIID component TAF4 domain containing protein.
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Os03g0441000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription initiation factor TFIID component TAF4 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.35 | 0.232 | 7.11 | -0.0755 | 0.503 | -0.536 | 0.149 | 2.23 | 0.141 | 4.99 | 21.4 | 1783 | -- | -- |
| 27.4 | 0.244 | 7.16 | -0.419 | 0.552 | -0.586 | 0.0898 | -- | 0.0967 | 5.06 | 2.703 | 18325 | -- | -- |
| 24.4 | 0.23 | 7.11 | -0.0804 | 0.506 | -0.534 | -- | 2.21 | 0.139 | 5 | 21.4 | 1769 | -- | -- |
| 27.42 | 0.244 | 7.16 | -0.42 | 0.552 | -0.586 | -- | -- | 0.0967 | 5.06 | 3.631 | 18325 | -- | -- |
| 35.79 | 0.28 | 7.17 | -0.562 | -- | -0.738 | -- | 0.935 | 0.0368 | -- | 21.4 | 1769 | -- | -- |
| 32.42 | 0.267 | 7.21 | -0.865 | 0.543 | -- | 0.0681 | -- | -0.13 | 5.18 | -- | -- | -- | -- |
| 32.44 | 0.267 | 7.21 | -0.865 | 0.544 | -- | -- | -- | -0.13 | 5.18 | -- | -- | -- | -- |
| 36.59 | 0.283 | 7.19 | -0.717 | -- | -0.681 | -- | -- | -0.00926 | -- | 21.4 | 1769 | -- | -- |
| 29.31 | 0.252 | 7.14 | -- | 0.55 | -0.792 | -- | -- | 0.195 | 5.09 | 4.554 | 42023 | -- | -- |
| 47.9 | 0.323 | 7.21 | -0.846 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 52.16 | 0.338 | 7.19 | -- | 0.529 | -- | -- | -- | -0.0335 | 5.24 | -- | -- | -- | -- |
| 44.83 | 0.312 | 7.14 | -- | -- | -0.817 | -- | -- | 0.206 | -- | 1.317 | 22141 | -- | -- |
| 66.78 | 0.381 | 7.19 | -- | -- | -- | -- | -- | -0.0223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 24.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 10 |
| 5 | 24.37 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 7 | 24.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 10 | 24.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 22 | 24.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 34 | 24.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 50 | 24.45 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 62 | 24.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 63 | 24.48 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 78 | 24.51 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 86 | 24.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 132 | 24.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 139 | 24.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 147 | 24.61 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 152 | 24.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 153 | 24.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 155 | 24.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 165 | 24.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 174 | 24.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 183 | 24.64 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 196 | 24.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 247 | 24.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 282 | 24.69 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 286 | 24.69 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 287 | 24.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 307 | 24.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 310 | 24.71 | radiation | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 311 | 24.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 327 | 24.71 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 345 | 24.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 349 | 24.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 353 | 24.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 379 | 24.73 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 449 | 24.75 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 457 | 24.76 | humidity | 90 | 43200 | < th | dose independent | sin | 2 | NA |
| 458 | 24.76 | radiation | 1 | 43200 | > th | dose independent | sin | 12 | NA |
| 473 | 24.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 516 | 24.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 543 | 24.78 | radiation | 1 | 14400 | < th | dose dependent | sin | 11 | NA |
| 557 | 24.79 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 558 | 24.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 563 | 24.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 571 | 24.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 590 | 24.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 597 | 24.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 616 | 24.80 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 618 | 24.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 657 | 24.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 739 | 24.81 | radiation | 20 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 740 | 24.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 759 | 24.81 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 760 | 24.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 780 | 24.82 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 783 | 24.82 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 810 | 24.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 883 | 24.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 894 | 24.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 903 | 24.83 | humidity | 90 | 43200 | > th | dose independent | sin | 2 | NA |
| 986 | 24.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 999 | 24.84 | radiation | 1 | 43200 | > th | dose independent | sin | 4 | NA |