BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0441000 Os03g0441000|AK108726
         (370 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43130.2  | chr5:17315608-17321144 REVERSE LENGTH=853          210   1e-54
AT1G27720.1  | chr1:9643351-9647376 REVERSE LENGTH=721            171   6e-43

>AT5G43130.2 | chr5:17315608-17321144 REVERSE LENGTH=853
          Length = 852

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/178 (60%), Positives = 134/178 (75%), Gaps = 2/178 (1%)

Query: 176 GQKKPLDALXXXXXXXXXXXXXXXXYHDQSIDQLNDVTAVSGVNLREEEEQLFSAPKEES 235
           GQKKPL+ L                  DQSI+QLNDVTAVSGVNLREEEEQLFS  KE+ 
Sbjct: 504 GQKKPLETLGSSPPPPSKKQKVAGNSMDQSIEQLNDVTAVSGVNLREEEEQLFSGAKEDG 563

Query: 236 RVSEAARMVVQLEEEKLILQKGPLKKKLAEIMRKCNLKSIGSDVERCLSMCVEERLRGFI 295
           RVSEA+R VV  EEE+LILQK PL++KLAEIM K  LK I +DVERCLS+CVEER+RG +
Sbjct: 564 RVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLL 623

Query: 296 SNTIRLSKQRVDLEKSRHRIYPLSSDVRSHILRVNREAREQWDKKLAEDAERIRKQSD 353
           S+ IRLSKQRVD EKSRHR + ++SD+R  I  +N++ +E+W+KK AE AE+++K S+
Sbjct: 624 SHIIRLSKQRVDAEKSRHRTF-ITSDIRLQINEMNQKVKEEWEKKQAE-AEKLKKPSE 679



>AT1G27720.1 | chr1:9643351-9647376 REVERSE LENGTH=721
          Length = 720

 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 88/166 (53%), Positives = 116/166 (69%), Gaps = 2/166 (1%)

Query: 176 GQKKPLDALXXXXXXXXXXXXXXXXYHDQSIDQLNDVTAVSGVNLREEEEQLF-SAPKEE 234
           GQKKPL+AL                  D+SI++ NDVTAVSG+NLREEE+QL  S PK+ 
Sbjct: 430 GQKKPLEALGSSLPPSRKKQKICGTSSDESIEKFNDVTAVSGINLREEEKQLLDSGPKKN 489

Query: 235 SRVSEAARMVVQLEEEKLILQKGPLKKKLAEIMRKCNLKSIGSDVERCLSMCVEERLRGF 294
            RVS+A R +V  EEE+ +LQK PL++KL EIM K  LK I  DVERCLS+CVEER+RG 
Sbjct: 490 DRVSKAYRRLVHGEEERTLLQKIPLQRKLTEIMGKSGLKHIDHDVERCLSLCVEERMRGL 549

Query: 295 ISNTIRLSKQRVDLEKSRHRIYPLSSDVRSHILRVNREAREQWDKK 340
           + N IR+SKQR D EK R+R + ++SD+R  I  +N++ +E+W+KK
Sbjct: 550 LFNIIRISKQRTDAEKCRNRTF-ITSDIRKEINEMNQKVKEEWEKK 594



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,122,957
Number of extensions: 282328
Number of successful extensions: 899
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 2
Length of query: 370
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,364,969
Effective search space: 2258541630
Effective search space used: 2258541630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)