Os03g0439700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1230 family protein.
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Os03g0439700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1230 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.2 | 0.434 | 13.8 | -0.616 | 2.1 | 0.911 | 2.04 | 0.226 | -0.302 | 7.97 | 25.75 | 202 | -- | -- |
| 85.29 | 0.43 | 13.8 | -0.596 | 2.11 | 0.899 | 2.05 | -- | -0.302 | 7.98 | 25.8 | 198 | -- | -- |
| 97.4 | 0.46 | 13.8 | -0.6 | 2.08 | 0.923 | -- | 0.448 | -0.304 | 7.92 | 25.8 | 227 | -- | -- |
| 97.58 | 0.46 | 13.8 | -0.551 | 2.09 | 0.906 | -- | -- | -0.302 | 7.98 | 25.8 | 161 | -- | -- |
| 267.33 | 0.762 | 13.8 | -0.457 | -- | 2.36 | -- | 1.98 | -0.101 | -- | 30.48 | 555 | -- | -- |
| 96.92 | 0.462 | 13.8 | -0.804 | 2.17 | -- | 2.05 | -- | -0.485 | 7.69 | -- | -- | -- | -- |
| 108.75 | 0.488 | 13.8 | -0.754 | 2.18 | -- | -- | -- | -0.488 | 7.63 | -- | -- | -- | -- |
| 269.33 | 0.764 | 13.8 | -0.155 | -- | 2.42 | -- | -- | -0.0356 | -- | 31.19 | 522 | -- | -- |
| 104.18 | 0.475 | 13.8 | -- | 2.08 | 1.09 | -- | -- | -0.203 | 8.01 | 25.81 | 203 | -- | -- |
| 363.4 | 0.891 | 13.9 | -0.724 | -- | -- | -- | -- | -0.456 | -- | -- | -- | -- | -- |
| 123.73 | 0.52 | 13.8 | -- | 2.17 | -- | -- | -- | -0.404 | 7.65 | -- | -- | -- | -- |
| 269.81 | 0.765 | 13.8 | -- | -- | 2.45 | -- | -- | -0.00963 | -- | 31.01 | 526 | -- | -- |
| 377.23 | 0.907 | 13.9 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.57 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 19 |
| 9 | 81.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 21 |
| 10 | 81.56 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 6 |
| 12 | 81.67 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 6 |
| 13 | 81.68 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 21 | 82.07 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 4 |
| 41 | 82.65 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 14 |
| 55 | 83.11 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 21 |
| 63 | 83.29 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 71 | 83.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 76 | 83.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 90 | 83.75 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 17 |
| 92 | 83.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 100 | 83.84 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 111 | 84.00 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 14 |
| 153 | 84.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 157 | 84.61 | temperature | 15 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 193 | 84.91 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 15 |
| 207 | 84.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 221 | 85.05 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 230 | 85.11 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 22 | 19 |
| 233 | 85.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 276 | 85.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 300 | 85.57 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 17 |
| 305 | 85.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 310 | 85.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 326 | 85.70 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 373 | 85.84 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 13 |
| 391 | 85.90 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 395 | 85.91 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 5 |
| 397 | 85.91 | radiation | 1 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 400 | 85.93 | wind | 1 | 90 | > th | dose independent | rect. | 17 | 14 |
| 410 | 85.97 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 426 | 86.01 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 20 | 20 |
| 439 | 86.05 | temperature | 15 | 90 | > th | dose independent | rect. | 7 | 10 |
| 445 | 86.07 | radiation | 1 | 270 | < th | dose independent | rect. | 2 | 18 |
| 465 | 86.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 482 | 86.16 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 22 | 19 |
| 498 | 86.20 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 21 | 18 |
| 521 | 86.25 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 529 | 86.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 544 | 86.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 556 | 86.35 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 3 |
| 558 | 86.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 569 | 86.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 585 | 86.39 | wind | 1 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 593 | 86.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 601 | 86.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 602 | 86.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 607 | 86.42 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 624 | 86.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 660 | 86.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 672 | 86.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 679 | 86.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 691 | 86.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 693 | 86.49 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 700 | 86.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 759 | 86.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 778 | 86.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 782 | 86.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 840 | 86.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 938 | 86.69 | wind | 3 | 270 | > th | dose independent | rect. | 17 | 3 |
| 989 | 86.75 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 11 |