BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0439700 Os03g0439700|AK065720
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67370.1 | chr5:26877667-26879465 REVERSE LENGTH=328 324 4e-89
AT5G11840.1 | chr5:3813610-3814805 REVERSE LENGTH=266 142 3e-34
>AT5G67370.1 | chr5:26877667-26879465 REVERSE LENGTH=328
Length = 327
Score = 324 bits (830), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/269 (60%), Positives = 187/269 (69%), Gaps = 14/269 (5%)
Query: 56 EPEGSRSG----FAGGVPSWDPGLEIQVPFEQRPVNEYSALKDSVLYSWAELSPGSFFLR 111
E +G+ G F+G SWDP EI+VP +QRPVNEYS+LK+ +LYSW EL P FF+R
Sbjct: 61 EDKGNNGGGSMSFSG--QSWDPSSEIEVPSDQRPVNEYSSLKEGMLYSWGELGPSEFFIR 118
Query: 112 LGSLWLITFTVLAAPIAAASFSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRL 171
LG LWL+TFTVL P+AAASF+P ++PL+F+LAAG GTL LVSL+VLRIYLGWSYVGDRL
Sbjct: 119 LGGLWLVTFTVLGVPVAAASFNPSREPLRFILAAGTGTLFLVSLIVLRIYLGWSYVGDRL 178
Query: 172 LSAVVPYEETGWYDGQMWVKPPEVLARDRLLGSYKVKPVINLLKQTLVGTGALLVGAVSL 231
LSAV+PYEE+GWYDGQMWVKPPEVLARDRLLGSYKVKPVI +LKQTL+GTGALLV A L
Sbjct: 179 LSAVIPYEESGWYDGQMWVKPPEVLARDRLLGSYKVKPVIKMLKQTLIGTGALLVSAFVL 238
Query: 232 FAFAAPVEDFLHSV--------NXXXXXXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXX 283
F FA PVEDF +
Sbjct: 239 FVFATPVEDFFKTTLGSTENQPEVSISRTSNKFNIRKEQLLRLPVDVVTDDDLAAAAAEA 298
Query: 284 XXGRPVYCRDRYYRALAGGQYCKWDDLLN 312
GRPVYCRDRYYRALAGGQYCKW+DL+
Sbjct: 299 ADGRPVYCRDRYYRALAGGQYCKWEDLVK 327
>AT5G11840.1 | chr5:3813610-3814805 REVERSE LENGTH=266
Length = 265
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 103/160 (64%), Gaps = 1/160 (0%)
Query: 73 PGLEIQVPFEQRPVNEYSALKDSVLYSWAELSPGSFFLRLGSLWLITFTVLAAPIA-AAS 131
P + VP EQ+P+NEY +L S +SWA + RL + P++ S
Sbjct: 57 PETDCPVPPEQQPINEYQSLSTSFPFSWASGDLIEYSTRLFLTGASFAFFVGLPVSWFGS 116
Query: 132 FSPGKDPLKFVLAAGIGTLLLVSLVVLRIYLGWSYVGDRLLSAVVPYEETGWYDGQMWVK 191
P +P+K +LAA + +V+L V+R+YLGW+YVG+RLLSA V YEETGWYDGQ+WVK
Sbjct: 117 IGPEYEPVKRILAASSSGIFVVTLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQVWVK 176
Query: 192 PPEVLARDRLLGSYKVKPVINLLKQTLVGTGALLVGAVSL 231
PEVLARDRLLGS+ VKPV+ LK TLV G L+ ++L
Sbjct: 177 TPEVLARDRLLGSFSVKPVLARLKNTLVILGLSLILVINL 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.140 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,617,019
Number of extensions: 200933
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)