Os03g0435900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0435900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.06 | 0.358 | 9.55 | 0.406 | 0.976 | -1.06 | -0.0582 | -0.0812 | 0.358 | 22.6 | 24.9 | 257 | -- | -- |
| 58.07 | 0.355 | 9.55 | 0.399 | 0.976 | -1.06 | -0.063 | -- | 0.355 | 22.6 | 24.9 | 257 | -- | -- |
| 58.08 | 0.355 | 9.55 | 0.41 | 0.978 | -1.07 | -- | -0.0941 | 0.358 | 22.6 | 24.9 | 254 | -- | -- |
| 58.09 | 0.355 | 9.55 | 0.396 | 0.977 | -1.06 | -- | -- | 0.355 | 22.6 | 24.91 | 257 | -- | -- |
| 92.21 | 0.447 | 9.55 | 0.191 | -- | -1.48 | -- | 0.305 | 0.239 | -- | 28.58 | 769 | -- | -- |
| 74.22 | 0.404 | 9.5 | 0.664 | 0.956 | -- | -0.0644 | -- | 0.563 | 22 | -- | -- | -- | -- |
| 74.23 | 0.403 | 9.5 | 0.667 | 0.957 | -- | -- | -- | 0.563 | 22 | -- | -- | -- | -- |
| 92.48 | 0.448 | 9.55 | 0.259 | -- | -1.48 | -- | -- | 0.252 | -- | 28.5 | 769 | -- | -- |
| 61.84 | 0.366 | 9.56 | -- | 0.971 | -1.18 | -- | -- | 0.28 | 22.7 | 24.9 | 270 | -- | -- |
| 129.35 | 0.531 | 9.48 | 0.679 | -- | -- | -- | -- | 0.564 | -- | -- | -- | -- | -- |
| 85.96 | 0.434 | 9.52 | -- | 0.959 | -- | -- | -- | 0.489 | 22.1 | -- | -- | -- | -- |
| 94.04 | 0.452 | 9.56 | -- | -- | -1.59 | -- | -- | 0.204 | -- | 28.44 | 775 | -- | -- |
| 141.51 | 0.555 | 9.49 | -- | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.63 | temperature | 25.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 3 | 55.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 4 | 55.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 9 | 56.17 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 43 | 57.23 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 53 | 57.33 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 80 | 57.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 86 | 57.63 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 118 | 57.82 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 137 | 57.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 149 | 58.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 163 | 58.08 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 257 | 58.51 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 292 | 58.63 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 296 | 58.65 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 395 | 58.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 413 | 59.00 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 414 | 59.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 416 | 59.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 428 | 59.02 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 429 | 59.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 430 | 59.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 435 | 59.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 458 | 59.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 459 | 59.10 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 460 | 59.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 464 | 59.11 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 477 | 59.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 486 | 59.16 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 491 | 59.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 492 | 59.17 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 493 | 59.17 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 497 | 59.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 503 | 59.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 505 | 59.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 510 | 59.20 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 514 | 59.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 531 | 59.25 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 637 | 59.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 670 | 59.50 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 679 | 59.52 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 728 | 59.60 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 750 | 59.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 752 | 59.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 761 | 59.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 783 | 59.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 792 | 59.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 811 | 59.71 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 848 | 59.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 858 | 59.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 862 | 59.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 871 | 59.79 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 882 | 59.80 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 908 | 59.84 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 941 | 59.87 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 974 | 59.90 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 985 | 59.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 995 | 59.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |