BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0435900 Os03g0435900|AK107787
         (99 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09550.1  | chr4:6039706-6039921 FORWARD LENGTH=72              82   4e-17
AT1G73790.1  | chr1:27745019-27745222 FORWARD LENGTH=68            79   4e-16

>AT4G09550.1 | chr4:6039706-6039921 FORWARD LENGTH=72
          Length = 71

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 45/51 (88%)

Query: 14 AARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 64
          A+R A+ESLEL F+MS ILDTGLDRHTLS+L+ALCD G NPEALA +V+EL
Sbjct: 5  ASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKEL 55



>AT1G73790.1 | chr1:27745019-27745222 FORWARD LENGTH=68
          Length = 67

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query: 14 AARQAKESLELAFQMSQILDTGLDRHTLSLLMALCDRGANPEALAALVREL 64
          AA  A+ESLEL F+MS IL+TGLDRHTLS+L+ALCD G NPEALA LV+EL
Sbjct: 5  AAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKEL 55



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,214,163
Number of extensions: 24997
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)