Os03g0433200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0433200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GRAS transcription factor domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.04	(0.0503)	R²	:	0.216
β₁	:	-1.06	(0.187)	R²_dD	:	0.0586	R²_D	:	0.00143
β₂	:	1.16	(0.132)	R²_dC	:	0.148	R²_C	:	0.0599
β₃	:	1.23	(0.191)	R²_dE	:	0.081	R²_E	:	-0.0191
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.54	(0.108)	R²_dN8	:	0.0576	R²_N8	:	0.0208
σ	:	0.941
deviance	:	408.56
__

_____

C
peak time of C	:	3.1
E
wheather	:	temperature
threshold	:	26.3
memory length	:	584
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
406.89	0.948	4.09	-1.42	1.2	1.52	-0.438	-2.85	-0.618	3.26	26.31	580	--	--
408.68	0.942	4.05	-1.1	1.19	1.27	-0.203	--	-0.527	2.98	26.54	584	--	--
407.26	0.94	4.08	-1.39	1.2	1.53	--	-2.93	-0.597	3.15	26.62	574	--	--
408.56	0.941	4.04	-1.06	1.16	1.23	--	--	-0.54	3.1	26.3	584	--	--
450.64	0.989	4.11	-1.65	--	1.33	--	-2.51	-0.642	--	26.21	1076	--	--
436.25	0.979	4.05	-0.846	0.947	--	-0.0473	--	-0.505	1.42	--	--	--	--
436.26	0.978	4.05	-0.844	0.947	--	--	--	-0.504	1.41	--	--	--	--
450.65	0.989	4.06	-1.12	--	1.12	--	--	-0.6	--	24.89	1058	--	--
436.35	0.973	4.02	--	1.12	1	--	--	-0.405	2.68	26.6	530	--	--
491.41	1.04	4.04	-0.807	--	--	--	--	-0.484	--	--	--	--	--
455.03	0.998	4.03	--	0.932	--	--	--	-0.41	1.37	--	--	--	--
480.63	1.02	4	--	--	0.824	--	--	-0.306	--	28.33	1052	--	--
508.57	1.05	4.02	--	--	--	--	--	-0.395	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	393.93	wind	7.0	90	< th	dose independent	rect.	3	16
2	395.85	temperature	30.0	30	< th	dose independent	rect.	3	8
4	396.90	humidity	80.0	270	> th	dose independent	rect.	24	8
5	397.03	humidity	50.0	30	> th	dose dependent	rect.	3	8
6	397.42	temperature	10.0	270	> th	dose dependent	rect.	13	9
8	397.84	temperature	30.0	30	< th	dose independent	rect.	11	16
9	397.97	temperature	15.0	270	> th	dose dependent	rect.	14	15
11	398.27	temperature	20.0	30	> th	dose independent	rect.	3	8
14	398.40	temperature	15.0	10	> th	dose dependent	rect.	16	14
15	398.41	humidity	60.0	270	> th	dose dependent	rect.	24	9
21	398.75	humidity	60.0	30	> th	dose independent	rect.	3	8
23	398.97	temperature	30.0	90	< th	dose dependent	rect.	14	13
24	399.00	temperature	30.0	90	< th	dose dependent	rect.	11	16
33	399.50	humidity	80.0	10	< th	dose independent	rect.	16	7
47	399.98	temperature	10.0	270	> th	dose dependent	rect.	13	19
51	400.07	humidity	70.0	90	> th	dose independent	rect.	11	16
66	400.44	temperature	10.0	30	> th	dose independent	rect.	3	8
69	400.44	atmosphere	995.0	30	> th	dose independent	rect.	3	8
70	400.44	atmosphere	1015.0	30	< th	dose independent	rect.	3	8
71	400.44	temperature	10.0	30	> th	dose independent	rect.	11	16
74	400.47	wind	9.0	30	< th	dose independent	rect.	3	8
80	400.65	atmosphere	995.0	90	> th	dose dependent	rect.	19	8
85	400.88	precipitation	0.1	30	< th	dose independent	rect.	3	8
86	400.88	precipitation	0.1	30	< th	dose dependent	rect.	3	8
97	401.03	wind	9.0	90	< th	dose dependent	rect.	3	16
98	401.04	humidity	50.0	30	> th	dose dependent	rect.	11	16
102	401.13	wind	3.0	270	> th	dose independent	rect.	12	8
105	401.18	precipitation	0.1	30	< th	dose independent	rect.	11	16
106	401.18	precipitation	0.1	30	< th	dose dependent	rect.	11	16
115	401.30	wind	9.0	30	< th	dose dependent	rect.	3	8
126	401.42	temperature	20.0	10	> th	dose independent	rect.	16	19
147	401.89	atmosphere	995.0	30	> th	dose dependent	rect.	11	16
156	402.07	temperature	15.0	30	> th	dose dependent	rect.	16	19
176	402.46	radiation	20.0	270	< th	dose dependent	rect.	9	16
193	402.59	temperature	10.0	1440	> th	dose independent	rect.	4	8
196	402.59	atmosphere	995.0	1440	> th	dose independent	rect.	4	8
197	402.59	temperature	10.0	1440	> th	dose independent	rect.	12	16
201	402.61	humidity	50.0	270	> th	dose independent	rect.	9	15
203	402.69	temperature	30.0	270	< th	dose independent	rect.	9	15
205	402.69	temperature	20.0	10	> th	dose dependent	rect.	16	6
207	402.73	temperature	15.0	90	> th	dose dependent	rect.	16	17
208	402.74	temperature	30.0	90	< th	dose dependent	rect.	17	10
215	402.86	humidity	50.0	90	> th	dose independent	rect.	11	16
234	403.08	temperature	25.0	90	> th	dose independent	rect.	15	6
249	403.20	temperature	10.0	30	> th	dose dependent	rect.	3	19
276	403.49	atmosphere	995.0	30	> th	dose independent	rect.	11	16
285	403.62	radiation	40.0	30	< th	dose independent	rect.	3	8
288	403.64	wind	9.0	30	< th	dose independent	rect.	11	16
300	403.76	humidity	80.0	270	< th	dose independent	rect.	13	7
318	403.94	temperature	30.0	90	< th	dose dependent	rect.	19	8
327	403.99	temperature	15.0	90	> th	dose independent	rect.	3	16
337	404.09	wind	3.0	30	> th	dose independent	rect.	16	6
363	404.28	temperature	10.0	270	> th	dose dependent	sin	17	NA
371	404.34	humidity	90.0	270	< th	dose dependent	rect.	13	7
374	404.36	humidity	70.0	90	> th	dose independent	rect.	19	8
375	404.36	humidity	70.0	90	> th	dose independent	rect.	14	13
383	404.41	humidity	90.0	10	< th	dose dependent	rect.	16	6
426	404.67	radiation	1.0	270	< th	dose independent	rect.	8	19
460	404.91	temperature	20.0	10	> th	dose independent	rect.	16	14
486	405.13	atmosphere	1015.0	30	< th	dose dependent	rect.	3	8
493	405.18	radiation	20.0	720	> th	dose independent	rect.	16	15
499	405.20	temperature	20.0	10	> th	dose independent	rect.	16	17
500	405.20	wind	7.0	270	< th	dose independent	rect.	1	18
508	405.24	temperature	10.0	30	> th	dose dependent	rect.	3	8
511	405.26	humidity	80.0	10	< th	dose independent	rect.	14	9
545	405.46	humidity	60.0	4320	< th	dose dependent	rect.	17	1
553	405.51	radiation	20.0	720	> th	dose independent	rect.	16	1
591	405.63	atmosphere	1015.0	10	< th	dose dependent	rect.	16	14
599	405.67	atmosphere	1005.0	30	> th	dose dependent	rect.	11	17
602	405.67	temperature	15.0	30	> th	dose dependent	rect.	14	21
625	405.78	radiation	1.0	720	> th	dose dependent	rect.	17	1
631	405.81	wind	5.0	90	< th	dose independent	rect.	19	8
634	405.82	temperature	25.0	270	> th	dose dependent	sin	16	NA
638	405.84	radiation	1.0	270	> th	dose dependent	rect.	15	14
656	405.90	radiation	1.0	270	> th	dose dependent	rect.	15	4
684	405.97	atmosphere	1005.0	90	> th	dose independent	rect.	19	8
689	406.00	humidity	80.0	90	> th	dose independent	rect.	3	7
692	406.01	wind	7.0	270	< th	dose independent	rect.	13	6
697	406.02	radiation	20.0	270	< th	dose dependent	sin	14	NA
721	406.06	temperature	20.0	10	> th	dose independent	rect.	14	21
772	406.20	radiation	1.0	270	> th	dose independent	sin	15	NA
777	406.23	temperature	30.0	720	< th	dose independent	rect.	4	23
795	406.28	atmosphere	1015.0	30	< th	dose independent	rect.	11	16
826	406.45	temperature	15.0	270	> th	dose independent	rect.	12	23
838	406.50	atmosphere	995.0	90	> th	dose independent	rect.	3	16
840	406.50	wind	9.0	90	< th	dose dependent	rect.	19	8
845	406.52	temperature	30.0	720	< th	dose independent	rect.	15	8
867	406.59	temperature	10.0	90	> th	dose independent	rect.	19	8
868	406.59	temperature	30.0	90	< th	dose independent	rect.	19	8
869	406.59	humidity	50.0	90	> th	dose independent	rect.	19	8
871	406.59	atmosphere	995.0	90	> th	dose independent	rect.	19	8
872	406.59	radiation	1.0	90	< th	dose independent	rect.	19	8
878	406.59	atmosphere	1015.0	90	< th	dose independent	rect.	3	16
879	406.59	radiation	1.0	90	< th	dose dependent	rect.	19	8
884	406.60	temperature	30.0	720	< th	dose independent	rect.	15	16
904	406.65	humidity	50.0	270	> th	dose independent	rect.	4	23
913	406.68	wind	9.0	90	< th	dose independent	rect.	19	8
926	406.73	humidity	60.0	4320	< th	dose dependent	rect.	16	4
941	406.74	precipitation	0.1	90	< th	dose independent	rect.	3	16
956	406.74	precipitation	0.1	90	< th	dose dependent	rect.	3	16