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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0429900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0319) R2 : 0.000367
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0275 (0.0673) R2dN8 : 0.000474 R2N8 : 0.000367
σ : 0.602
deviance : 166.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.45 0.574 3.08 -0.418 0.245 -0.467 -0.311 2.27 -0.139 11 1009 99 -- --
153.66 0.577 3.08 -0.458 0.25 -0.32 -0.379 -- -0.0672 10.9 1267 100 -- --
149.85 0.57 3.08 -0.425 0.246 -0.467 -- 2.32 -0.141 11 1009 105 -- --
154.26 0.578 3.08 -0.47 0.253 -0.33 -- -- -0.0691 11 1577 99 -- --
153.33 0.577 3.09 -0.423 -- -0.511 -- 2.39 -0.148 -- 1009 194 -- --
154.76 0.583 3.07 -0.477 0.258 -- -0.397 -- -0.025 10.7 -- -- -- --
155.41 0.584 3.07 -0.492 0.26 -- -- -- -0.0261 10.8 -- -- -- --
158.01 0.585 3.1 -0.475 -- -0.318 -- -- -0.0921 -- 1010 244 -- --
157.19 0.584 3.05 -- 0.259 -0.41 -- -- 0.0977 10.8 2209 47520 -- --
159.6 0.59 3.08 -0.498 -- -- -- -- -0.0277 -- -- -- -- --
161.81 0.595 3.06 -- 0.264 -- -- -- 0.0288 10.9 -- -- -- --
161.34 0.592 3.05 -- -- -0.417 -- -- 0.0979 -- 2227 47520 -- --
166.14 0.602 3.07 -- -- -- -- -- 0.0275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.54 wind 1.0 10 < th dose dependent rect. 7 20
3 138.89 wind 1.0 10 < th dose dependent rect. 9 18
8 140.96 wind 1.0 10 < th dose independent rect. 6 21
11 141.67 wind 1.0 10 < th dose independent rect. 9 18
13 141.89 wind 1.0 10 < th dose dependent rect. 1 2
22 142.61 wind 1.0 10 < th dose dependent rect. 21 6
33 142.91 wind 7.0 1440 > th dose independent rect. 1 2
35 142.91 wind 7.0 1440 > th dose dependent rect. 1 2
47 143.69 wind 1.0 1440 < th dose dependent rect. 17 6
50 143.95 wind 1.0 10 < th dose independent rect. 1 2
54 144.03 wind 1.0 10 < th dose dependent sin 18 NA
55 144.09 wind 1.0 1440 < th dose independent rect. 17 6
61 144.45 wind 1.0 10 < th dose independent sin 18 NA
88 145.11 wind 1.0 1440 > th dose independent rect. 17 6
124 145.93 wind 1.0 1440 < th dose dependent rect. 21 2
143 146.16 wind 1.0 1440 < th dose independent rect. 21 2
149 146.32 atmosphere 1005.0 90 > th dose independent rect. 8 19
151 146.37 wind 1.0 720 < th dose dependent rect. 1 1
166 146.73 wind 1.0 10 > th dose independent sin 18 NA
174 146.87 wind 7.0 10 < th dose independent rect. 3 15
180 147.01 wind 9.0 10 < th dose independent rect. 3 23
186 147.08 wind 1.0 720 < th dose dependent rect. 20 6
192 147.14 wind 1.0 720 < th dose dependent rect. 22 4
195 147.17 wind 7.0 10 > th dose independent rect. 19 1
197 147.17 wind 7.0 10 > th dose dependent rect. 19 1
199 147.18 wind 7.0 10 > th dose independent rect. 19 20
201 147.19 humidity 70.0 720 > th dose independent rect. 2 7
214 147.26 wind 1.0 720 < th dose dependent rect. 13 13
223 147.34 temperature 15.0 90 > th dose independent rect. 3 15
224 147.35 wind 1.0 1440 > th dose independent rect. 19 4
225 147.36 wind 1.0 1440 > th dose independent rect. 21 2
235 147.46 wind 7.0 10 > th dose independent rect. 19 15
248 147.59 radiation 10.0 90 < th dose dependent rect. 8 19
259 147.66 atmosphere 1015.0 30 < th dose dependent rect. 3 22
270 147.72 atmosphere 1005.0 10 > th dose independent rect. 2 1
278 147.77 wind 1.0 720 < th dose dependent rect. 9 17
282 147.82 humidity 50.0 4320 < th dose independent rect. 12 1
283 147.84 atmosphere 1005.0 90 > th dose independent rect. 18 21
287 147.86 temperature 30.0 10 > th dose independent rect. 10 1
309 147.97 wind 1.0 10 < th dose independent rect. 1 9
314 147.98 wind 1.0 10 < th dose independent rect. 1 12
336 148.06 temperature 15.0 10 > th dose dependent rect. 2 1
363 148.16 wind 1.0 270 < th dose dependent rect. 22 1
365 148.17 temperature 25.0 30 < th dose independent rect. 2 1
371 148.18 temperature 10.0 30 > th dose independent rect. 2 1
374 148.18 humidity 50.0 30 > th dose independent rect. 2 1
378 148.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
380 148.18 radiation 1.0 30 < th dose independent rect. 2 1
385 148.18 precipitation 0.1 30 < th dose independent rect. 2 1
387 148.18 temperature 10.0 30 > th dose independent rect. 3 23
388 148.18 atmosphere 1000.0 10 > th dose dependent rect. 2 1
389 148.18 radiation 1.0 30 < th dose dependent rect. 2 1
394 148.18 precipitation 0.1 30 < th dose dependent rect. 2 1
416 148.24 humidity 80.0 270 < th dose dependent rect. 7 2
425 148.26 humidity 50.0 30 > th dose dependent rect. 2 1
436 148.28 atmosphere 1015.0 30 < th dose dependent rect. 2 1
446 148.32 temperature 30.0 30 < th dose dependent rect. 2 1
461 148.38 humidity 90.0 30 > th dose independent rect. 2 1
496 148.41 wind 5.0 10 > th dose dependent rect. 19 20
498 148.42 atmosphere 1005.0 30 > th dose independent rect. 18 18
499 148.42 wind 1.0 10 > th dose independent rect. 21 23
506 148.43 wind 7.0 30 < th dose independent rect. 12 21
512 148.45 atmosphere 995.0 90 > th dose dependent rect. 18 9
513 148.45 atmosphere 1015.0 90 < th dose dependent rect. 3 15
514 148.45 radiation 40.0 30 > th dose dependent rect. 13 21
523 148.47 wind 7.0 10 > th dose dependent rect. 19 15
531 148.49 wind 1.0 10 < th dose dependent rect. 1 11
536 148.50 wind 1.0 10 < th dose dependent rect. 1 9
547 148.52 wind 9.0 30 < th dose dependent rect. 3 15
549 148.53 atmosphere 1005.0 30 > th dose independent rect. 9 3
552 148.53 wind 7.0 10 > th dose dependent rect. 12 2
560 148.55 temperature 10.0 90 > th dose dependent rect. 18 9
594 148.59 atmosphere 995.0 90 > th dose dependent rect. 8 19
609 148.61 atmosphere 995.0 10 > th dose dependent rect. 9 18
616 148.63 wind 1.0 10 > th dose independent rect. 12 21
620 148.64 atmosphere 995.0 90 > th dose independent rect. 3 15
627 148.65 radiation 40.0 90 > th dose dependent rect. 8 1
646 148.66 radiation 10.0 90 < th dose independent rect. 8 19
654 148.68 temperature 30.0 90 < th dose independent rect. 18 9
655 148.68 humidity 70.0 90 > th dose independent rect. 18 9
668 148.70 atmosphere 1005.0 90 > th dose independent rect. 8 13
685 148.74 radiation 30.0 1440 < th dose independent rect. 4 3
687 148.74 radiation 1.0 90 < th dose independent rect. 18 9
698 148.75 atmosphere 1005.0 90 > th dose independent rect. 8 6
709 148.78 humidity 70.0 270 < th dose independent rect. 8 1
721 148.80 radiation 10.0 90 < th dose dependent rect. 17 10
725 148.81 precipitation 0.1 90 < th dose independent rect. 3 15
732 148.81 precipitation 0.1 90 < th dose dependent rect. 3 15
736 148.83 precipitation 0.1 90 < th dose independent rect. 18 9
745 148.83 precipitation 0.1 90 < th dose dependent rect. 18 9
746 148.83 radiation 10.0 90 < th dose dependent rect. 15 12
748 148.84 temperature 10.0 90 > th dose independent rect. 18 9
750 148.84 atmosphere 995.0 90 > th dose independent rect. 18 9
755 148.84 atmosphere 1015.0 90 < th dose independent rect. 3 15
760 148.85 radiation 1.0 90 < th dose independent rect. 14 13
766 148.86 radiation 20.0 43200 < th dose dependent rect. 19 9
775 148.88 atmosphere 1005.0 90 > th dose independent rect. 24 23
780 148.89 wind 1.0 30 > th dose independent rect. 2 1
781 148.89 wind 1.0 270 < th dose independent rect. 22 1
804 148.93 wind 9.0 90 < th dose independent rect. 18 9
828 149.00 radiation 20.0 90 < th dose dependent rect. 9 2
839 149.02 wind 1.0 10 > th dose independent rect. 3 15
847 149.04 atmosphere 1005.0 30 > th dose independent rect. 1 14
861 149.07 temperature 10.0 1440 > th dose independent rect. 19 9
864 149.07 temperature 30.0 1440 < th dose independent rect. 19 9
868 149.07 humidity 50.0 1440 > th dose independent rect. 19 9
870 149.07 atmosphere 995.0 1440 > th dose independent rect. 19 9
871 149.07 radiation 1.0 1440 < th dose independent rect. 19 9
891 149.07 temperature 10.0 1440 > th dose independent rect. 4 15
910 149.10 humidity 80.0 4320 < th dose independent rect. 6 1
916 149.11 radiation 20.0 10 > th dose dependent rect. 7 3