BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0429900 Os03g0429900|AK119372
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14800.1  | chr1:5099572-5102558 FORWARD LENGTH=385             54   4e-08

>AT1G14800.1 | chr1:5099572-5102558 FORWARD LENGTH=385
          Length = 384

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 3   HVLISQLSFGDSNKRILARVSRLWNFTDLNNHTKIFHTDLVLLDEMGTSIHAQIYPPITE 62
           +V    L  G S ++++ R+ R W+  ++    +     L+LLDE  + IHA I   +  
Sbjct: 15  YVAFDALRLGRSTQQVVGRLLRFWDARNIKKDGQFMGIVLLLLDEKCSVIHAFIPAALAS 74

Query: 63  KMKPLLKEEKVYYIDSFTVRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPGITFSL 122
             + +L+E  ++ +  F V    + Y+   +  ++ F   TT+ E  +V P      F L
Sbjct: 75  HFRQVLREGIIFNVSGFEVGRCTKLYKITDHPFLLRFLPATTIIEVSDVGPTIEREKFML 134

Query: 123 TPFEDVPSLVEKN-------SFYVGNNI 143
             F+++ +L   N       +F  G+N+
Sbjct: 135 RNFDNLQALANTNIELPGQITFVQGSNL 162



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,143,721
Number of extensions: 167507
Number of successful extensions: 485
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)