Os03g0428800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0428800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.96 | 0.257 | 14.1 | -0.646 | 0.778 | -0.914 | 0.59 | -0.034 | -0.393 | 15.6 | 1.221 | 230 | -- | -- |
| 29.95 | 0.255 | 14.1 | -0.642 | 0.787 | -0.909 | 0.621 | -- | -0.39 | 15.6 | 1.263 | 227 | -- | -- |
| 30.27 | 0.256 | 14.1 | -0.636 | 0.781 | -0.911 | -- | -0.407 | -0.388 | 15.5 | 1.06 | 228 | -- | -- |
| 31.15 | 0.26 | 14.1 | -0.638 | 0.779 | -0.917 | -- | -- | -0.391 | 15.6 | 1.14 | 228 | -- | -- |
| 38.93 | 0.291 | 14 | -0.404 | -- | -1.38 | -- | -0.289 | -0.255 | -- | 1.179 | 315 | -- | -- |
| 35.18 | 0.278 | 14 | -0.58 | 1.8 | -- | 0.659 | -- | -0.349 | 14.5 | -- | -- | -- | -- |
| 36.74 | 0.284 | 14 | -0.563 | 1.8 | -- | -- | -- | -0.346 | 14.5 | -- | -- | -- | -- |
| 35.06 | 0.276 | 14.1 | -0.693 | -- | -1.51 | -- | -- | -0.409 | -- | 0.9 | 311 | -- | -- |
| 41.56 | 0.3 | 14.1 | -- | 0.802 | -0.888 | -- | -- | -0.333 | 15.8 | 2.792 | 205 | -- | -- |
| 227.73 | 0.705 | 14 | -0.639 | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
| 45.09 | 0.314 | 14 | -- | 1.81 | -- | -- | -- | -0.283 | 14.5 | -- | -- | -- | -- |
| 47.72 | 0.322 | 14 | -- | -- | -1.5 | -- | -- | -0.327 | -- | 1.521 | 307 | -- | -- |
| 238.52 | 0.721 | 14 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.23 | wind | 5.0 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 5 | 23.37 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 2 | 4 |
| 9 | 23.47 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 22 | 23.76 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 23 | 23.77 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 24 | 23.79 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 43 | 23.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 3 |
| 44 | 23.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 49 | 23.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 50 | 23.96 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 51 | 23.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 56 | 24.01 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 71 | 24.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 86 | 24.21 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 5 |
| 100 | 24.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 102 | 24.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 103 | 24.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 106 | 24.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 107 | 24.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 109 | 24.27 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 114 | 24.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 115 | 24.27 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 144 | 24.38 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 5 |
| 145 | 24.38 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 5 |
| 147 | 24.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 19 |
| 151 | 24.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 159 | 24.41 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 170 | 24.49 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 20 |
| 179 | 24.54 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 7 | 19 |
| 182 | 24.54 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 185 | 24.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 201 | 24.61 | wind | 9.0 | 10 | < th | dose independent | rect. | 7 | 19 |
| 205 | 24.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 1 |
| 206 | 24.63 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 209 | 24.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 210 | 24.64 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 214 | 24.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 217 | 24.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 221 | 24.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 223 | 24.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 230 | 24.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 23 |
| 231 | 24.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 242 | 24.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 243 | 24.67 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 20 |
| 246 | 24.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 247 | 24.68 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 306 | 24.76 | radiation | 30.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 341 | 24.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 14 |
| 346 | 24.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 348 | 24.82 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 5 |
| 350 | 24.83 | radiation | 1.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 377 | 24.85 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 379 | 24.85 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 5 |
| 380 | 24.85 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 383 | 24.85 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 384 | 24.85 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 2 | 5 |
| 388 | 24.85 | temperature | 10.0 | 10 | > th | dose independent | rect. | 7 | 19 |
| 399 | 24.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 407 | 24.90 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 417 | 24.93 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 442 | 24.99 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 443 | 24.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 491 | 25.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 494 | 25.04 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 523 | 25.10 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 3 |
| 546 | 25.13 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 547 | 25.13 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 5 |
| 550 | 25.14 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 551 | 25.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 554 | 25.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 559 | 25.14 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 564 | 25.14 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 565 | 25.14 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 572 | 25.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 573 | 25.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 574 | 25.17 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 611 | 25.20 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 616 | 25.21 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 20 |
| 620 | 25.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 627 | 25.24 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 630 | 25.24 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 5 |
| 634 | 25.24 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 641 | 25.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 647 | 25.27 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 4 |
| 648 | 25.27 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 4 |
| 655 | 25.27 | temperature | 10.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 656 | 25.27 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 20 |
| 672 | 25.30 | radiation | 1.0 | 270 | < th | dose independent | sin | 9 | NA |
| 686 | 25.32 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 735 | 25.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 760 | 25.44 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 763 | 25.44 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 773 | 25.46 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 794 | 25.47 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 804 | 25.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 842 | 25.52 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 854 | 25.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 20 |
| 860 | 25.55 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 873 | 25.57 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 919 | 25.63 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 15 |
| 924 | 25.63 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 931 | 25.64 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 948 | 25.66 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 958 | 25.68 | wind | 9.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 977 | 25.70 | radiation | 1.0 | 270 | > th | dose independent | sin | 9 | NA |
| 987 | 25.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 22 |