BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0428800 Os03g0428800|AK060233
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26580.1  | chr3:9758933-9760349 FORWARD LENGTH=351            244   2e-65

>AT3G26580.1 | chr3:9758933-9760349 FORWARD LENGTH=351
          Length = 350

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/201 (62%), Positives = 152/201 (75%), Gaps = 6/201 (2%)

Query: 1   RERVRRELQKVAKEQAERRATAKQMFDLGQRAYGRGMYGRSIEFLEAALTIIRPSSLLGG 60
           R RV+RELQKVA+EQAERR TA+ MF+LGQ+AYG+GMYGR+IEFLE ALTII   +L GG
Sbjct: 153 RMRVKRELQKVAQEQAERRKTAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGG 212

Query: 61  EIQIWLAMAYEANRRHKDCIALYKELESTHPMISIRRQAAELRYISEAPKLKISNDEVVT 120
           EIQIWLAMAYEAN RH DCI LY++LE  HP   IRRQA+ELRYI +APKLKIS +E+VT
Sbjct: 213 EIQIWLAMAYEANNRHADCIDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVT 272

Query: 121 IPQIGSSWDWYAGTWSDKIKEQEDKKRKMVAASS-QVEPSPNIFGDLSFLRPPT--EWTR 177
           IP IGSS+D YA TWSDK   + DK+R+M A+++ Q+  S +  G L   RP    E  R
Sbjct: 273 IPMIGSSYDSYAVTWSDK---ERDKERRMNASTTNQLNSSDDFLGKLLVWRPVVGMEKNR 329

Query: 178 SAWVIVTLWIVLIGTAIYLQR 198
             W+ +TLW  L+G A+ LQR
Sbjct: 330 VFWLALTLWFGLVGAALILQR 350



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,250,649
Number of extensions: 165891
Number of successful extensions: 524
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)