FiT-DB / Search/ Help/ Sample detail

Os03g0425300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0275) R2 : 0.819
β1 : 1.92 (0.147) R2dD : 0.155 R2D : 0.364
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.3 (0.136) R2dE : 0.271 R2E : 0.603
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.836 (0.0654) R2dN8 : 0.108 R2N8 : 0.109
σ : 0.495
deviance : 112.91
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 8.149
memory length : 18199
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 1.52

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.25 0.434 10.7 2.13 0.627 -0.77 -0.616 5.49 0.619 16.1 2.094 25556 18 1.37
102.54 0.472 10.4 2.68 0.524 -1.57 -1.16 -- 0.937 16.2 9.822 15008 18 1.75
86.15 0.432 10.7 2.16 0.597 -0.705 -- 5.57 0.624 16.1 2.671 25298 18 1.58
99.05 0.464 10.4 2.58 0.614 -1.76 -- -- 0.915 15.9 9.325 15850 18 1.23
106.66 0.481 10.7 2.07 -- -0.762 -- 5.57 0.589 -- 2.897 25312 18 0.731
166.16 0.604 10.3 3.76 0.624 -- -0.757 -- 1.36 16.1 -- -- -- --
167.69 0.606 10.3 3.76 0.625 -- -- -- 1.36 16.3 -- -- -- --
112.91 0.495 10.4 1.92 -- -2.3 -- -- 0.836 -- 8.149 18199 17.9 1.52
157.4 0.584 10.6 -- 0.681 -3.17 -- -- 0.278 16.3 4.104 47520 17.6 1.46
188.67 0.642 10.3 3.73 -- -- -- -- 1.34 -- -- -- -- --
539.39 1.09 10.4 -- 0.554 -- -- -- 0.937 16.5 -- -- -- --
139.41 0.55 10.4 -- -- -3.52 -- -- 0.494 -- 6.12 23876 17.9 6.83
555.8 1.1 10.4 -- -- -- -- -- 0.925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.82 temperature 15 43200 < th dose independent rect. 10 4
2 86.91 radiation 30 43200 > th dose independent rect. 7 1
17 86.98 temperature 15 43200 > th dose independent rect. 10 4
18 87.18 radiation 1 43200 > th dose independent rect. 4 1
28 87.18 radiation 1 43200 > th dose dependent rect. 4 1
38 87.32 radiation 10 43200 < th dose independent rect. 22 7
46 87.42 radiation 1 14400 < th dose independent rect. 8 5
51 87.49 radiation 10 43200 < th dose independent rect. 3 2
67 87.96 temperature 15 43200 > th dose independent rect. 10 1
68 87.97 radiation 1 14400 > th dose independent rect. 8 4
69 87.98 temperature 15 43200 < th dose independent rect. 10 1
88 88.60 temperature 15 43200 < th dose independent rect. 10 17
93 88.71 temperature 15 43200 > th dose independent rect. 22 1
94 88.71 temperature 15 43200 < th dose independent rect. 22 1
97 88.78 temperature 15 43200 < th dose independent rect. 6 21
102 88.82 temperature 15 43200 < th dose dependent rect. 18 9
133 89.05 radiation 10 43200 < th dose independent rect. 18 1
141 89.08 temperature 15 43200 > th dose independent rect. 10 17
147 89.10 temperature 15 43200 < th dose dependent rect. 20 5
151 89.11 temperature 15 43200 < th dose independent rect. 21 4
158 89.14 radiation 10 43200 < th dose independent rect. 18 7
179 89.21 temperature 15 43200 < th dose dependent sin 13 NA
214 89.34 temperature 15 43200 < th dose independent rect. 21 21
220 89.36 radiation 1 14400 > th dose independent rect. 8 2
275 89.49 temperature 15 43200 < th dose independent rect. 24 23
281 89.51 temperature 15 43200 < th dose independent no NA NA
289 89.52 temperature 15 43200 < th dose independent sin 16 NA
292 89.52 temperature 15 43200 < th dose independent rect. 16 23
308 89.55 temperature 15 43200 < th dose independent rect. 13 23
343 89.63 temperature 15 43200 < th dose independent rect. 24 18
363 89.67 temperature 15 43200 < th dose independent sin 2 NA
465 89.87 temperature 15 43200 > th dose independent sin 17 NA
585 90.12 wind 1 43200 > th dose independent rect. 19 2
737 90.44 temperature 15 43200 < th dose independent rect. 24 1
755 90.46 temperature 15 43200 > th dose independent rect. 21 23
780 90.49 temperature 15 43200 > th dose independent sin 0 NA
805 90.52 temperature 15 43200 > th dose independent rect. 10 23
827 90.57 temperature 15 43200 > th dose independent rect. 24 23
831 90.58 temperature 15 43200 < th dose dependent no NA NA
834 90.60 temperature 15 43200 > th dose independent no NA NA
877 90.69 temperature 15 43200 < th dose dependent rect. 24 1
882 90.70 temperature 15 43200 > th dose independent rect. 13 23
883 90.70 temperature 15 43200 > th dose independent rect. 15 23
956 90.86 temperature 15 43200 < th dose dependent rect. 4 23
961 90.87 temperature 15 43200 > th dose independent rect. 24 20
974 90.90 temperature 15 43200 < th dose dependent rect. 2 23