Os03g0420000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os03g0420000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.35 | 0.489 | 8.97 | 0.615 | 0.569 | -1.16 | 0.531 | 2.1 | -0.0704 | 8.26 | 16.59 | 663 | -- | -- |
| 109.21 | 0.487 | 9.01 | 0.236 | 0.631 | -1.36 | -0.0745 | -- | -0.177 | 9.89 | 2.502 | 353 | -- | -- |
| 108.04 | 0.484 | 8.99 | 0.485 | 0.584 | -1.3 | -- | 1.4 | -0.0965 | 9.74 | 16 | 415 | -- | -- |
| 109.21 | 0.487 | 9.01 | 0.232 | 0.635 | -1.37 | -- | -- | -0.166 | 9.89 | 3.264 | 361 | -- | -- |
| 122.37 | 0.515 | 8.98 | 0.661 | -- | -1.57 | -- | 1.67 | -0.0106 | -- | 17.45 | 601 | -- | -- |
| 129.36 | 0.533 | 9.05 | -0.0723 | 0.868 | -- | 0.219 | -- | -0.365 | 8.25 | -- | -- | -- | -- |
| 129.51 | 0.533 | 9.05 | -0.0655 | 0.867 | -- | -- | -- | -0.364 | 8.28 | -- | -- | -- | -- |
| 124.55 | 0.52 | 9.01 | 0.331 | -- | -1.62 | -- | -- | -0.0955 | -- | 16.07 | 585 | -- | -- |
| 110.48 | 0.49 | 9.02 | -- | 0.647 | -1.26 | -- | -- | -0.205 | 9.69 | 0.582 | 362 | -- | -- |
| 171.16 | 0.611 | 9.07 | -0.0597 | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
| 129.62 | 0.533 | 9.05 | -- | 0.867 | -- | -- | -- | -0.357 | 8.29 | -- | -- | -- | -- |
| 127.26 | 0.525 | 9.03 | -- | -- | -1.47 | -- | -- | -0.153 | -- | 16.65 | 576 | -- | -- |
| 171.26 | 0.611 | 9.07 | -- | -- | -- | -- | -- | -0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.99 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 5 | 105.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 9 | 105.75 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 10 | 105.82 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 46 | 106.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 50 | 106.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 80 | 107.01 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 83 | 107.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 86 | 107.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 89 | 107.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 93 | 107.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 117 | 107.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 118 | 107.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 137 | 107.36 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 158 | 107.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 163 | 107.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 21 |
| 173 | 107.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 188 | 107.45 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |
| 197 | 107.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 208 | 107.48 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 251 | 107.55 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 256 | 107.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 275 | 107.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 314 | 107.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 334 | 107.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 373 | 107.87 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 376 | 107.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 382 | 107.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 389 | 107.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 391 | 107.91 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 403 | 107.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 415 | 107.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 418 | 107.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 422 | 108.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 425 | 108.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 19 |
| 428 | 108.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 449 | 108.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 485 | 108.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 521 | 108.19 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 536 | 108.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 563 | 108.25 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 578 | 108.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 627 | 108.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 650 | 108.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 666 | 108.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 695 | 108.49 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 696 | 108.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 735 | 108.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 741 | 108.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 773 | 108.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 13 |
| 800 | 108.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 803 | 108.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 809 | 108.67 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |
| 828 | 108.68 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 845 | 108.69 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 865 | 108.71 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 875 | 108.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 913 | 108.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 956 | 108.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 985 | 108.83 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 990 | 108.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 14 |