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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0418500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.53 (0.161) R2 : 0.153
β1 : 3.67 (1.46) R2dD : 1.03 R2D : -1.07
β2 : -- (--) R2dC : -- R2C : --
β3 : -11.5 (5.31) R2dE : 4.68 R2E : -6.38
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 127 (50.5) R2dD*E : 7.15 R2D*E : -5.24
γ1 : -0.225 (0.0926) R2dN8 : 0.0148 R2N8 : -0.176
σ : 0.809
deviance : 301.65
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.31
memory length : 4239
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.88
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
300.57 0.815 2.54 3.55 0.0163 -11 0.579 122 -0.224 13.9 30.3 4225 7.9 1.1
345.84 0.873 2.94 0.0799 0.253 0.286 -0.488 -- -0.286 23.9 -10.8 2027 7.33 8.42
301.58 0.809 2.54 3.61 0.0389 -11.3 -- 125 -0.224 18.1 30.31 4259 7.9 1.08
346.77 0.873 2.94 0.0939 0.274 0.33 -- -- -0.302 23 2.834 1679 6.33 7.7
301.65 0.809 2.53 3.67 -- -11.5 -- 127 -0.225 -- 30.31 4239 7.88 1.07
347.5 0.874 2.94 0.0834 0.00618 -- 0.548 -- -0.293 13.2 -- -- -- --
348.74 0.875 2.93 0.103 0.00551 -- -- -- -0.29 12.9 -- -- -- --
344.81 0.865 2.94 -0.0143 -- 0.334 -- -- -0.324 -- 23.8 4348 7.72 1.15
346.81 0.867 2.94 -- 0.312 0.55 -- -- -0.308 22.5 -58.19 1555 6.1 7.93
348.75 0.873 2.93 0.102 -- -- -- -- -0.29 -- -- -- -- --
349.02 0.874 2.94 -- 0.00403 -- -- -- -0.301 11.8 -- -- -- --
343.7 0.863 2.92 -- -- 0.279 -- -- -0.351 -- 25.29 4353 8.33 0.0357
349.02 0.872 2.94 -- -- -- -- -- -0.301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.40 temperature 30.0 4320 > th dose dependent rect. 8 1
15 314.22 temperature 30.0 4320 > th dose independent rect. 8 1
29 315.45 wind 1.0 30 < th dose independent rect. 17 1
40 315.45 wind 1.0 30 < th dose dependent rect. 17 1
81 318.39 temperature 30.0 4320 < th dose independent rect. 5 4
82 318.43 humidity 70.0 90 < th dose independent rect. 17 1
86 318.78 temperature 30.0 4320 < th dose independent rect. 1 8
89 318.84 temperature 30.0 4320 < th dose independent rect. 20 13
90 318.90 temperature 30.0 4320 < th dose independent rect. 22 11
100 319.65 humidity 70.0 90 < th dose dependent rect. 17 1
211 327.63 wind 1.0 4320 < th dose dependent rect. 6 2
213 328.14 wind 5.0 90 > th dose independent rect. 5 2
214 328.14 wind 5.0 90 > th dose dependent rect. 5 2
219 328.20 radiation 20.0 90 > th dose independent rect. 6 1
233 328.20 radiation 20.0 90 > th dose dependent rect. 6 1
271 329.54 wind 5.0 90 > th dose dependent rect. 2 6
288 330.12 wind 9.0 10 > th dose independent sin 7 NA
303 330.67 wind 9.0 10 < th dose independent sin 7 NA
337 330.90 wind 1.0 4320 < th dose dependent rect. 2 1
340 331.23 wind 9.0 10 > th dose independent rect. 10 2
369 331.54 wind 5.0 90 > th dose independent rect. 2 6
384 332.02 radiation 1.0 10 < th dose independent rect. 13 1
394 332.02 radiation 1.0 10 < th dose dependent rect. 13 1
422 332.27 humidity 80.0 90 > th dose dependent rect. 12 1
424 332.31 humidity 80.0 90 > th dose independent rect. 12 1
440 332.70 radiation 20.0 4320 > th dose independent rect. 6 2
473 332.84 radiation 40.0 4320 < th dose independent rect. 10 1
474 332.95 radiation 40.0 4320 > th dose independent rect. 10 1
509 333.16 wind 1.0 4320 < th dose independent rect. 5 3
510 333.17 wind 1.0 4320 < th dose independent rect. 2 1
517 333.26 radiation 10.0 4320 > th dose dependent rect. 5 2
529 333.33 wind 5.0 10 > th dose independent rect. 5 3
566 333.46 wind 5.0 10 > th dose independent rect. 7 1
577 333.53 wind 5.0 10 > th dose independent rect. 1 7
613 333.64 wind 1.0 4320 < th dose dependent rect. 2 6
614 333.69 wind 1.0 4320 > th dose independent rect. 5 3
616 333.74 wind 9.0 10 > th dose dependent sin 8 NA
618 333.79 precipitation 0.1 1440 > th dose independent rect. 15 1
619 333.79 wind 1.0 10 < th dose independent rect. 14 4
623 333.79 precipitation 0.1 1440 > th dose dependent rect. 15 1
632 333.86 wind 1.0 4320 > th dose independent rect. 2 1
637 333.88 wind 7.0 90 > th dose independent rect. 9 2
655 333.93 humidity 90.0 1440 > th dose dependent rect. 15 2
656 333.97 precipitation 0.1 1440 < th dose independent rect. 15 1
657 333.97 precipitation 0.1 1440 < th dose dependent rect. 15 1
664 334.11 humidity 90.0 30 < th dose independent rect. 3 1
689 334.25 humidity 50.0 270 < th dose independent rect. 14 4
727 334.32 humidity 50.0 270 < th dose dependent rect. 14 4
753 334.40 wind 7.0 90 > th dose independent rect. 2 9
770 334.58 wind 5.0 90 > th dose dependent rect. 9 2
823 334.83 wind 7.0 10 > th dose dependent rect. 3 9
886 334.98 humidity 90.0 4320 > th dose dependent rect. 5 1
888 334.98 wind 7.0 10 > th dose dependent rect. 9 3
937 335.09 humidity 50.0 270 < th dose dependent sin 12 NA
945 335.13 wind 9.0 10 > th dose independent no NA NA
947 335.13 wind 1.0 4320 < th dose independent rect. 2 6