BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0418500 Os03g0418500|Os03g0418500
         (813 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1  | chr4:14333528-14335255 FORWARD LENGTH=576           56   7e-08
ATMG00310.1  | chrM:90883-91347 REVERSE LENGTH=155                 55   2e-07
AT1G43760.1  | chr1:16528880-16531065 REVERSE LENGTH=627           55   2e-07

>AT4G29090.1 | chr4:14333528-14335255 FORWARD LENGTH=576
          Length = 575

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 14/138 (10%)

Query: 515 VLKGRYYHESEFLQATRKKHSSHTWRAILARRDILFKGLVRRIGDGNSTRIWQDRWL--- 571
           V K RY+H+S+ L A      S  W++I A ++IL +G    +G+G    IW+ +WL   
Sbjct: 87  VFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSK 146

Query: 572 PGHFRGKPITEPVRQHVHV-----VSDLLIPSG-SWNTELIKQLFLDVDAQAILSL---- 621
           P     +    P +++  V     VSDL+  SG  W  ++I+ LF +V+ + I  L    
Sbjct: 147 PASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGG 206

Query: 622 PRQLDA-TSHASPSGDTT 638
            R LD+ T   + SGD T
Sbjct: 207 RRILDSYTWDYTSSGDYT 224



>ATMG00310.1 | chrM:90883-91347 REVERSE LENGTH=155
          Length = 154

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 515 VLKGRYYHESEFLQATRKKHSSHTWRAILARRDILFKGLVRRIGDGNSTRIWQDRWL 571
           +L+ RY+  S  ++ +     S+ WR+I+  R++L +GL+R IGDG  T++W DRW+
Sbjct: 88  LLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWLDRWI 144



>AT1G43760.1 | chr1:16528880-16531065 REVERSE LENGTH=627
          Length = 626

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 398 REVDRALSMMGAHKAPGPDSFTVGFYQAHWETIGPSVTRAVLNFLNGGELPEAINQTTLV 457
           +E+  A+  M  +KAPGPDSFT  F+   W  +  S   AV  F   G L +  N T + 
Sbjct: 534 KEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAIT 593

Query: 458 LTPKVREVLHIDM 470
           L PKV  V  + M
Sbjct: 594 LIPKVTGVDQLSM 606



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,243,335
Number of extensions: 709282
Number of successful extensions: 1494
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1493
Number of HSP's successfully gapped: 3
Length of query: 813
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 706
Effective length of database: 8,173,057
Effective search space: 5770178242
Effective search space used: 5770178242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)