Os03g0415200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP3K protein kinase-like protein.
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Os03g0415200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP3K protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 305.07 | 0.821 | 6.21 | -2.56 | 0.847 | -1.49 | 1.4 | 5.25 | 0.42 | 3.21 | 25.7 | 4623 | -- | -- |
| 312.32 | 0.823 | 6.28 | -3.14 | 0.944 | -1.47 | 1.92 | -- | 0.478 | 2.84 | 21.7 | 8117 | -- | -- |
| 311.37 | 0.822 | 6.22 | -2.59 | 0.852 | -1.5 | -- | 5.24 | 0.413 | 3.1 | 25.69 | 4621 | -- | -- |
| 315.42 | 0.827 | 6.32 | -3.36 | 0.873 | -1.46 | -- | -- | 0.373 | 3.17 | 21.58 | 8111 | -- | -- |
| 348.75 | 0.875 | 6.42 | -4.44 | -- | -0.678 | -- | -0.891 | 0.000842 | -- | 26.1 | 4738 | -- | -- |
| 356.9 | 0.886 | 6.44 | -4.39 | 0.82 | -- | 1.46 | -- | -0.165 | 3.41 | -- | -- | -- | -- |
| 363.55 | 0.893 | 6.45 | -4.42 | 0.826 | -- | -- | -- | -0.173 | 3.31 | -- | -- | -- | -- |
| 351.88 | 0.877 | 6.4 | -4.24 | -- | -0.7 | -- | -- | 0.0597 | -- | 26.1 | 4738 | -- | -- |
| 355.95 | 0.879 | 6.14 | -- | 0.861 | -3.58 | -- | -- | 1.2 | 3.24 | 18.6 | 47520 | -- | -- |
| 402.04 | 0.937 | 6.45 | -4.38 | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
| 878.21 | 1.39 | 6.34 | -- | 0.738 | -- | -- | -- | 0.319 | 3.32 | -- | -- | -- | -- |
| 398.98 | 0.93 | 6.14 | -- | -- | -3.54 | -- | -- | 1.21 | -- | 18.62 | 47520 | -- | -- |
| 909.01 | 1.41 | 6.34 | -- | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 286.26 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 17 | 286.26 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 287.23 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 62 | 292.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 65 | 294.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 66 | 294.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 67 | 294.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 69 | 294.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 73 | 295.43 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 80 | 296.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 81 | 296.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 82 | 296.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 83 | 296.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 87 | 296.26 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 90 | 296.39 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 95 | 296.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 100 | 296.71 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 134 | 297.33 | radiation | 30 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 135 | 297.33 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 137 | 297.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 142 | 297.38 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 147 | 297.44 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 149 | 297.46 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 150 | 297.47 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 155 | 297.51 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 169 | 297.66 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 182 | 297.84 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 193 | 297.92 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 202 | 297.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 211 | 298.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 226 | 298.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 246 | 298.24 | radiation | 20 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 262 | 298.31 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 300 | 298.43 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 348 | 298.57 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 375 | 298.67 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 397 | 298.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 424 | 299.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 426 | 299.04 | radiation | 1 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 427 | 299.05 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 441 | 299.14 | radiation | 10 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 448 | 299.17 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 449 | 299.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 452 | 299.17 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 465 | 299.26 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 510 | 299.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 515 | 299.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 517 | 299.57 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 518 | 299.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 519 | 299.57 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 604 | 299.92 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 605 | 299.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 613 | 299.94 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 624 | 299.97 | temperature | 15 | 43200 | < th | dose dependent | sin | 11 | NA |
| 631 | 299.98 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 638 | 299.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 665 | 300.08 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 689 | 300.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 736 | 300.29 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 790 | 300.48 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |
| 791 | 300.48 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 820 | 300.53 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 834 | 300.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 898 | 300.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 925 | 300.80 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 992 | 300.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 2 |