BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0415200 Os03g0415200|AK064733
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13680.1 | chr1:4690409-4692702 FORWARD LENGTH=347 427 e-120
AT5G67130.1 | chr5:26791599-26793649 FORWARD LENGTH=427 401 e-112
AT1G49740.1 | chr1:18407728-18409468 FORWARD LENGTH=360 377 e-105
AT4G36945.1 | chr4:17420098-17422047 REVERSE LENGTH=409 362 e-100
AT3G19310.1 | chr3:6694260-6696193 FORWARD LENGTH=414 357 5e-99
>AT1G13680.1 | chr1:4690409-4692702 FORWARD LENGTH=347
Length = 346
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/324 (63%), Positives = 243/324 (75%), Gaps = 9/324 (2%)
Query: 27 VGDSCSTAVDCGGGQWCFDCQPEFAGSSCVRSAATNPFQLTNNSLPFNKYAYLTTHNSFA 86
+GD CS+ DC G CF C + A CVRS T+ F + NNS+PFNKYA+LTTHNS+A
Sbjct: 32 LGDQCSSDEDCNVGLGCFKCGIDVA--RCVRSNITDQFSIVNNSMPFNKYAFLTTHNSYA 89
Query: 87 IVGEPSHTGVPRITFDNQEDTVTDQLNNGVRALMLDTYDFKGDVWLCHSNGGKCNDFTAF 146
I G+ H QEDT+ QLN+GVRALMLDTYD++GDVW CHS +C +FT F
Sbjct: 90 IEGKALHVAT-------QEDTIVQQLNSGVRALMLDTYDYEGDVWFCHSFDEQCFEFTKF 142
Query: 147 EPALDTFKEIEAFLGANPSEIVTLILEDYVHAPNGLTNVFKASGLMKYWFPVSKMPQKGK 206
A+DTFKEI AFL ANPSEIVTLILEDYV + NGLT VF SGL K+WFPV MP G+
Sbjct: 143 NRAIDTFKEIFAFLTANPSEIVTLILEDYVKSQNGLTKVFTDSGLKKFWFPVQNMPIGGQ 202
Query: 207 DWPLVSDMVASNQRLLVFTSIRSKQATEGIAYQWNYMVENNYGDDGMDAGKCSNRAESAP 266
DWPLV DMVA+N RL+VFTS +SKQ TEGIAYQWNYMVEN YGDDG+ +CSNRA+SA
Sbjct: 203 DWPLVKDMVANNHRLIVFTSAKSKQETEGIAYQWNYMVENQYGDDGVKPDECSNRADSAL 262
Query: 267 LNDKTKSLVLVNYFPSVPVKVTACLQHSKSLTDMVNTCYGAAGNRWANLLAVDYYKRSDG 326
L DKTK+LV VN+F +VPVK+ C ++S+ L DM+ TCY AAGNRWAN +AV++YKRS+G
Sbjct: 263 LTDKTKALVSVNHFKTVPVKILTCEENSEQLLDMIKTCYVAAGNRWANFVAVNFYKRSNG 322
Query: 327 GGAFQATDLLNGRLLCGCQDVRAC 350
GG FQA D LNG LLCG DV AC
Sbjct: 323 GGTFQAIDKLNGELLCGRDDVHAC 346
>AT5G67130.1 | chr5:26791599-26793649 FORWARD LENGTH=427
Length = 426
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/329 (57%), Positives = 234/329 (71%), Gaps = 4/329 (1%)
Query: 29 DSCSTAVDCGGGQWCFDCQPEFAGSS--CVRSAATNPFQLTNNSLPFNKYAYLTTHNSFA 86
DSCS+A DC G +C DC P S C R AT+P + N LPFNKY +L THN+F+
Sbjct: 38 DSCSSATDCVSGLYCGDC-PAVGRSKPVCTRGQATSPTSIIN-GLPFNKYTWLMTHNAFS 95
Query: 87 IVGEPSHTGVPRITFDNQEDTVTDQLNNGVRALMLDTYDFKGDVWLCHSNGGKCNDFTAF 146
P GV RITF NQEDT+T+QL NGVR LMLD YDF D+WLCHS G+C +FTAF
Sbjct: 96 NANAPLLPGVERITFYNQEDTITNQLQNGVRGLMLDMYDFNNDIWLCHSLRGQCFNFTAF 155
Query: 147 EPALDTFKEIEAFLGANPSEIVTLILEDYVHAPNGLTNVFKASGLMKYWFPVSKMPQKGK 206
+PA++ +E+EAFL NP+EIVT+I+EDYVH P GL+ +F +GL KYWFPVSKMP+KG+
Sbjct: 156 QPAINILREVEAFLSQNPTEIVTIIIEDYVHRPKGLSTLFANAGLDKYWFPVSKMPRKGE 215
Query: 207 DWPLVSDMVASNQRLLVFTSIRSKQATEGIAYQWNYMVENNYGDDGMDAGKCSNRAESAP 266
DWP V+DMV N RLLVFTS+ +K+ EG+AYQW YMVEN GD G+ G C NR ES P
Sbjct: 216 DWPTVTDMVQENHRLLVFTSVAAKEDEEGVAYQWRYMVENESGDPGVKRGSCPNRKESQP 275
Query: 267 LNDKTKSLVLVNYFPSVPVKVTACLQHSKSLTDMVNTCYGAAGNRWANLLAVDYYKRSDG 326
LN K+ SL L+NYFP+ PV+ AC +HS L +MV TC + GNR N LAV++Y RSDG
Sbjct: 276 LNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTCLKSGGNRMPNFLAVNFYMRSDG 335
Query: 327 GGAFQATDLLNGRLLCGCQDVRACSRGSG 355
GG F+ D +NG +LCGC+ + AC G+
Sbjct: 336 GGVFEILDRMNGPVLCGCETLSACQPGAA 364
>AT1G49740.1 | chr1:18407728-18409468 FORWARD LENGTH=360
Length = 359
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/325 (55%), Positives = 226/325 (69%), Gaps = 4/325 (1%)
Query: 28 GDSCSTAVDCGGGQWCFDC--QPEFAGSSCVRSAATNPFQLTNNSLPFNKYAYLTTHNSF 85
G +C T +C G C C +F C R+ NP LPFNKY++LTTHNSF
Sbjct: 30 GKTCITNSNCDAGLHCETCIANTDFR-PRCSRTQPINPITKAK-GLPFNKYSWLTTHNSF 87
Query: 86 AIVGEPSHTGVPRITFDNQEDTVTDQLNNGVRALMLDTYDFKGDVWLCHSNGGKCNDFTA 145
A +GE S TG + NQ+D++T QLNNGVR MLD YDF+ D+WLCHS G C +FTA
Sbjct: 88 ARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQNDIWLCHSFDGTCFNFTA 147
Query: 146 FEPALDTFKEIEAFLGANPSEIVTLILEDYVHAPNGLTNVFKASGLMKYWFPVSKMPQKG 205
F+PA++ +E + FL N E+VT+I+EDYV +P GLT VF A+GL K+ FPVS+MP+ G
Sbjct: 148 FQPAINILREFQVFLEKNKEEVVTIIIEDYVKSPKGLTKVFDAAGLRKFMFPVSRMPKNG 207
Query: 206 KDWPLVSDMVASNQRLLVFTSIRSKQATEGIAYQWNYMVENNYGDDGMDAGKCSNRAESA 265
DWP + DMV NQRLLVFTS K+ATEGIAYQW YMVEN YG+ G+ G C NRA+SA
Sbjct: 208 GDWPRLDDMVRKNQRLLVFTSDSHKEATEGIAYQWKYMVENQYGNGGLKVGVCPNRAQSA 267
Query: 266 PLNDKTKSLVLVNYFPSVPVKVTACLQHSKSLTDMVNTCYGAAGNRWANLLAVDYYKRSD 325
P++DK+KSLVLVN+FP + AC Q+S SL + + TCY AAG RW N +AVD+YKRSD
Sbjct: 268 PMSDKSKSLVLVNHFPDAADVIVACKQNSASLLESIKTCYQAAGQRWPNFIAVDFYKRSD 327
Query: 326 GGGAFQATDLLNGRLLCGCQDVRAC 350
GGGA QA D+ NG L+CGC + AC
Sbjct: 328 GGGAPQAVDVANGNLICGCDNFAAC 352
>AT4G36945.1 | chr4:17420098-17422047 REVERSE LENGTH=409
Length = 408
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/325 (55%), Positives = 229/325 (70%), Gaps = 2/325 (0%)
Query: 27 VGDSCSTAVDCGGGQWCFDCQPE-FAGSSCVRSAATNPFQLTNNSLPFNKYAYLTTHNSF 85
+G++CS+ +C G C C GS+C R NP N LPFNKY++LTTHNS+
Sbjct: 25 MGETCSSTSECDAGLSCQSCPANGNTGSTCTRIQPLNPTSKVN-GLPFNKYSWLTTHNSY 83
Query: 86 AIVGEPSHTGVPRITFDNQEDTVTDQLNNGVRALMLDTYDFKGDVWLCHSNGGKCNDFTA 145
AI G S TG ++ NQED++T+QL NGVR +MLDTYDF+ D+WLCHS GG C +FTA
Sbjct: 84 AITGANSATGSFLVSPKNQEDSITNQLKNGVRGIMLDTYDFQNDIWLCHSTGGTCFNFTA 143
Query: 146 FEPALDTFKEIEAFLGANPSEIVTLILEDYVHAPNGLTNVFKASGLMKYWFPVSKMPQKG 205
F+PA++ KEI FL +N SEIVT+ILEDYV + GLTNVF ASGL K+ P+S+MP+ G
Sbjct: 144 FQPAINALKEINDFLESNLSEIVTIILEDYVKSQMGLTNVFNASGLSKFLLPISRMPKDG 203
Query: 206 KDWPLVSDMVASNQRLLVFTSIRSKQATEGIAYQWNYMVENNYGDDGMDAGKCSNRAESA 265
DWP V DMV NQRL+VFTS + K+A+EG+AYQWNYMVEN YG+DGM G CS+R+ES+
Sbjct: 204 TDWPTVDDMVKQNQRLVVFTSKKDKEASEGLAYQWNYMVENQYGNDGMKDGSCSSRSESS 263
Query: 266 PLNDKTKSLVLVNYFPSVPVKVTACLQHSKSLTDMVNTCYGAAGNRWANLLAVDYYKRSD 325
L+ ++SLV NYF + P AC +S L +M+ TC+ AAG RW N +AVD+Y+RSD
Sbjct: 264 SLDTMSRSLVFQNYFETSPNSTQACADNSSPLIEMMRTCHEAAGKRWPNFIAVDFYQRSD 323
Query: 326 GGGAFQATDLLNGRLLCGCQDVRAC 350
GGA +A D NGRL CGC + C
Sbjct: 324 SGGAAEAVDEANGRLTCGCDSLVYC 348
>AT3G19310.1 | chr3:6694260-6696193 FORWARD LENGTH=414
Length = 413
Score = 357 bits (916), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 169/326 (51%), Positives = 219/326 (67%), Gaps = 2/326 (0%)
Query: 28 GDSCSTAVDCGGGQWCFDC-QPEFAGSSCVRSAATNPFQLTNNSLPFNKYAYLTTHNSFA 86
G++C + +C G C C + C R NP LP+NKY++LTTHNSFA
Sbjct: 30 GETCIVSKNCDRGLHCESCLASDSFRPRCSRMQPINPTTKVK-GLPYNKYSWLTTHNSFA 88
Query: 87 IVGEPSHTGVPRITFDNQEDTVTDQLNNGVRALMLDTYDFKGDVWLCHSNGGKCNDFTAF 146
+G S TG + NQ+D++T QL NGVR MLD YDF+ D+WLCHS GG C ++TAF
Sbjct: 89 RMGAKSGTGSMILAPSNQQDSITSQLLNGVRGFMLDLYDFQNDIWLCHSYGGNCFNYTAF 148
Query: 147 EPALDTFKEIEAFLGANPSEIVTLILEDYVHAPNGLTNVFKASGLMKYWFPVSKMPQKGK 206
+PA++ KE + FL N +VTLILEDYV +PNGLT VF ASGL + FPVS+MP+ G+
Sbjct: 149 QPAVNILKEFQVFLDKNKDVVVTLILEDYVKSPNGLTRVFDASGLRNFMFPVSRMPKNGE 208
Query: 207 DWPLVSDMVASNQRLLVFTSIRSKQATEGIAYQWNYMVENNYGDDGMDAGKCSNRAESAP 266
DWP + DM+ NQRLLVFTS K+A+EGIA+ W YM+EN YGD GM AG C+NR ES
Sbjct: 209 DWPTLDDMICQNQRLLVFTSNPQKEASEGIAFMWRYMIENQYGDGGMKAGVCTNRPESVA 268
Query: 267 LNDKTKSLVLVNYFPSVPVKVTACLQHSKSLTDMVNTCYGAAGNRWANLLAVDYYKRSDG 326
+ D+++SL+LVNYFP + +C Q+S L D V C A+G RW N +AVD+YKRSDG
Sbjct: 269 MGDRSRSLILVNYFPDTADVIGSCKQNSAPLLDTVKNCQEASGKRWPNFIAVDFYKRSDG 328
Query: 327 GGAFQATDLLNGRLLCGCQDVRACSR 352
GGA +A D+ NG +CGC+D+ AC
Sbjct: 329 GGAPKAVDVANGHAVCGCEDIAACKE 354
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,043,888
Number of extensions: 350519
Number of successful extensions: 682
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 5
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)