Os03g0407000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : von Willebrand factor, type A domain containing protein.
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Os03g0407000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : von Willebrand factor, type A domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.38 | 0.33 | 11.4 | -0.0996 | 0.767 | 0.481 | 0.616 | -1.15 | 0.534 | 0.882 | 18.76 | 1337 | -- | -- |
| 51.86 | 0.335 | 11.4 | -0.138 | 0.825 | 0.488 | 0.804 | -- | 0.511 | 0.261 | 16.64 | 1151 | -- | -- |
| 50.08 | 0.33 | 11.4 | -0.0551 | 0.818 | 0.501 | -- | -1.45 | 0.538 | 0.521 | 17.08 | 1167 | -- | -- |
| 54.61 | 0.344 | 11.4 | -0.195 | 0.816 | 0.487 | -- | -- | 0.49 | 0.284 | 16.64 | 1139 | -- | -- |
| 69.9 | 0.392 | 11.4 | -0.205 | -- | 0.425 | -- | 0.653 | 0.384 | -- | 10.03 | 1796 | -- | -- |
| 59.55 | 0.362 | 11.4 | -0.26 | 0.691 | -- | 0.697 | -- | 0.387 | 0.954 | -- | -- | -- | -- |
| 61.51 | 0.367 | 11.4 | -0.286 | 0.692 | -- | -- | -- | 0.383 | 1.16 | -- | -- | -- | -- |
| 62.52 | 0.368 | 11.4 | -0.101 | -- | 0.683 | -- | -- | 0.439 | -- | 13.69 | 212 | -- | -- |
| 55.56 | 0.347 | 11.4 | -- | 0.818 | 0.517 | -- | -- | 0.522 | 0.402 | 14.55 | 1145 | -- | -- |
| 91.21 | 0.446 | 11.4 | -0.26 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 63.67 | 0.373 | 11.4 | -- | 0.688 | -- | -- | -- | 0.415 | 1.15 | -- | -- | -- | -- |
| 62.97 | 0.37 | 11.4 | -- | -- | 0.653 | -- | -- | 0.472 | -- | 12.25 | 210 | -- | -- |
| 92.99 | 0.45 | 11.4 | -- | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 2 | 48.06 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 3 | 48.11 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 4 | 48.20 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 5 | 48.21 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 8 | 48.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 9 | 48.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 10 | 48.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 11 | 48.30 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 15 | 48.35 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 34 | 48.46 | temperature | 20.0 | 720 | > th | dose independent | sin | 11 | NA |
| 41 | 48.50 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 43 | 48.53 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 47 | 48.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 72 | 48.75 | temperature | 20.0 | 270 | > th | dose independent | sin | 8 | NA |
| 84 | 48.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 94 | 48.88 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 125 | 48.97 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 165 | 49.13 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 195 | 49.20 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 197 | 49.21 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 209 | 49.24 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 211 | 49.25 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 215 | 49.26 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 218 | 49.27 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 219 | 49.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 222 | 49.28 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 225 | 49.28 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 236 | 49.30 | humidity | 90.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 254 | 49.31 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 261 | 49.32 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 262 | 49.32 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 270 | 49.34 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 283 | 49.35 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 290 | 49.36 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 335 | 49.44 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 359 | 49.48 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 370 | 49.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 387 | 49.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 389 | 49.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 404 | 49.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 441 | 49.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 443 | 49.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 453 | 49.58 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 462 | 49.59 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 465 | 49.59 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 485 | 49.61 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 488 | 49.61 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 553 | 49.66 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 566 | 49.67 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 568 | 49.67 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 616 | 49.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 657 | 49.72 | humidity | 90.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 658 | 49.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 724 | 49.76 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 761 | 49.79 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 765 | 49.79 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 850 | 49.83 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 890 | 49.85 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 891 | 49.85 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 904 | 49.86 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 17 |
| 916 | 49.87 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 942 | 49.88 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 950 | 49.88 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 954 | 49.88 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |