BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0407000 Os03g0407000|AK062571
         (360 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19110.1  | chr1:6602270-6605766 FORWARD LENGTH=755            315   2e-86
AT1G72500.1  | chr1:27295336-27298556 REVERSE LENGTH=757          283   7e-77

>AT1G19110.1 | chr1:6602270-6605766 FORWARD LENGTH=755
          Length = 754

 Score =  315 bits (807), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/345 (48%), Positives = 228/345 (66%), Gaps = 8/345 (2%)

Query: 2   IENAREWVNTNFIAEGGTDIMHPLSEAIALLSNSHNALPQIFLVTDGSVEDERNICRTVK 61
           +E   EW+N NF+   GT+++ PL +A+ +LSN+  ++P IF VTDGSVEDER+IC  +K
Sbjct: 388 VERGIEWMNKNFVVADGTNMLPPLEKAVEMLSNTRGSIPMIFFVTDGSVEDERHICDVMK 447

Query: 62  EQLATRGSKSPRISTFGLGSYCNHYFLRMLASIGKGHYDAAFDTGSIEGRMVQWFQKASS 121
           + LA+ GS  PRI TFGLG +CNHYFL+MLA+I  G +++ ++T  IE RM + F KA S
Sbjct: 448 KHLASAGSVFPRIHTFGLGVFCNHYFLQMLANISCGQHESVYNTDHIEERMDKLFTKALS 507

Query: 122 TIVINISIDATKYIREFEVDSEYIQDISAKCPLCVSGRYQGKLPETLTAKGYLADMSEIS 181
           TI++NI+I+  + + E EV    I D+++  PL + GRY+GK PE + AKG L D+S  S
Sbjct: 508 TILVNIAIEPLQSLDEVEVYPSNIPDLTSASPLMIYGRYRGKFPENVIAKGLLGDLSSFS 567

Query: 182 IELRVQHVKDISLDKVLAKQQMDLLTAKAWFYENNQLEMKVVKLSIQNSIPSEYTRTILL 241
            +L VQ  KD+ LDKV AK  +DLLTA+AWF E+ QL+ K+ KLSIQ  + SEYTR I L
Sbjct: 568 TDLTVQSAKDMPLDKVFAKNVIDLLTAEAWFSEDKQLKEKIAKLSIQTGVLSEYTRMIQL 627

Query: 242 QNFVEKIEQGKQKPKKNSTQNEQS------ATSLNGLTLGFGDTAATRENLSAGFGDTKP 295
           +N  E+++  +   KK +T N +          L  L +GFGD  ATREN+  GFG+ K 
Sbjct: 628 EN-TEELKPSETGGKKKTTSNGEKQKMISRTIPLQSLGIGFGDKTATRENVPPGFGEQKA 686

Query: 296 PERFEMFDKAV-GCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQL 339
           P+  E F KA   CC  L + CCCMC +  CSK+ND+C +V  QL
Sbjct: 687 PDAAEKFVKAASSCCVSLCNKCCCMCCVQCCSKLNDQCVLVFTQL 731



>AT1G72500.1 | chr1:27295336-27298556 REVERSE LENGTH=757
          Length = 756

 Score =  283 bits (725), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/356 (43%), Positives = 221/356 (62%), Gaps = 18/356 (5%)

Query: 1   TIENAREWVNTNFIAEGGTDIMHPLSEAIALLSNSHNALPQIFLVTDGSVEDERNICRTV 60
           TI    EW+++N IA GGT+++ PL +A+ LL  S+  +P ++LVTDGSVE+ER IC  +
Sbjct: 385 TISAVTEWLDSNLIANGGTNMLLPLKQAMKLLEGSNIGVPLVYLVTDGSVENEREICHAM 444

Query: 61  KEQLATRG-SKSPRISTFGLGSYCNHYFLRMLASIGKGHYDAAFDTGSIEGRMVQWFQKA 119
           KE  +  G S SPRISTFG+GS+CNHYFL+MLA IG G+YD   +T S E +M + F+ A
Sbjct: 445 KESCSRNGKSISPRISTFGIGSFCNHYFLQMLARIGNGYYDGTNNTDSFEHQMSRLFEIA 504

Query: 120 SSTIVINISIDATKYIREFEVDSEYIQDISAKCPLCVSGRYQGKLPETLTAKGYLADMSE 179
           SSTIV N + DA K +R  E+    + DI+   PL +SGRY+G+ P+ +  +G LADMS 
Sbjct: 505 SSTIVANTTFDALKLLRSVELFPCQVPDITLGDPLILSGRYKGEFPDEVELRGTLADMSC 564

Query: 180 ISIELRVQHVKDISLDKVLAKQQMDLLTAKAWFYENNQLEMKVVKLSIQNSIPSEYTRTI 239
            +IEL VQ  KDI LDKVLA++Q++ LTA+AWF +  +L+ KV++LSIQ   PSEYT+ +
Sbjct: 565 FTIELTVQKAKDIPLDKVLARRQINELTARAWFEDKKELQEKVMRLSIQTGFPSEYTQMV 624

Query: 240 LLQNFVEK---------IEQGKQKPKKNSTQNEQSATSLNGLTL-----GFGDTAATREN 285
           L     E+         I++  + P     +  Q + S+    L     GFG+ AAT +N
Sbjct: 625 LSVKHDEEEKTMARPVSIKEILRNPPYQIHKQMQRSNSMRRSLLGKQGYGFGNVAATLKN 684

Query: 286 LSAGFGDTKPPERFEMFDKAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCG 341
           +     + K  E  E+  +A    S + D  CCMC +   S+++D+C IV  QLC 
Sbjct: 685 VPPWMEEPKEVEGTELLIRAA---SGVVDRVCCMCCLQCMSRVSDQCTIVFSQLCA 737



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,143,728
Number of extensions: 284474
Number of successful extensions: 863
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)