Os03g0402000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trafficking protein particle complex subunit 3.
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Os03g0402000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trafficking protein particle complex subunit 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.42 | 0.478 | 7.17 | -0.546 | 0.775 | -1.67 | -1.06 | 0.523 | -0.414 | 17.6 | 18.93 | 3809 | -- | -- |
| 103.32 | 0.473 | 7.15 | -0.514 | 0.766 | -1.86 | -1.07 | -- | -0.401 | 17.7 | 18.6 | 3809 | -- | -- |
| 105.68 | 0.479 | 7.16 | -0.513 | 0.776 | -1.74 | -- | 0.422 | -0.408 | 17.3 | 18.8 | 3729 | -- | -- |
| 105.62 | 0.479 | 7.15 | -0.514 | 0.767 | -1.93 | -- | -- | -0.406 | 17.2 | 18.69 | 3732 | -- | -- |
| 135.82 | 0.543 | 7.15 | -0.513 | -- | -1.73 | -- | 0.56 | -0.419 | -- | 18.8 | 3550 | -- | -- |
| 138.71 | 0.552 | 7.1 | 0.21 | 0.738 | -- | -0.949 | -- | -0.162 | 17.8 | -- | -- | -- | -- |
| 140.55 | 0.555 | 7.1 | 0.219 | 0.736 | -- | -- | -- | -0.165 | 17.5 | -- | -- | -- | -- |
| 135.86 | 0.543 | 7.14 | -0.506 | -- | -1.96 | -- | -- | -0.416 | -- | 18.7 | 3550 | -- | -- |
| 110.25 | 0.489 | 7.13 | -- | 0.762 | -1.62 | -- | -- | -0.306 | 17.3 | 18.21 | 3668 | -- | -- |
| 168.75 | 0.607 | 7.09 | 0.194 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 141.81 | 0.557 | 7.1 | -- | 0.732 | -- | -- | -- | -0.19 | 17.5 | -- | -- | -- | -- |
| 140.48 | 0.552 | 7.12 | -- | -- | -1.6 | -- | -- | -0.318 | -- | 18.26 | 3526 | -- | -- |
| 169.75 | 0.608 | 7.09 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.52 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 2 | 100.54 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 12 | 100.96 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 22 | 101.26 | humidity | 70 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 26 | 101.30 | humidity | 70 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 38 | 101.42 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 39 | 101.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 44 | 101.47 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 46 | 101.49 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 47 | 101.49 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 12 |
| 48 | 101.49 | humidity | 80 | 43200 | < th | dose dependent | sin | 8 | NA |
| 61 | 101.58 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 75 | 101.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 76 | 101.69 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 97 | 101.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 100 | 101.90 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 116 | 101.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 148 | 102.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 165 | 102.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 186 | 102.32 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 189 | 102.39 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 190 | 102.39 | humidity | 70 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 205 | 102.46 | humidity | 60 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 206 | 102.47 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 211 | 102.49 | humidity | 60 | 43200 | > th | dose dependent | rect. | 12 | 16 |
| 213 | 102.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 231 | 102.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 269 | 102.84 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 291 | 102.92 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 316 | 103.06 | humidity | 90 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 317 | 103.07 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 8 |
| 332 | 103.10 | humidity | 60 | 43200 | > th | dose dependent | rect. | 21 | 19 |
| 359 | 103.20 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 363 | 103.20 | wind | 7 | 14400 | > th | dose dependent | rect. | 16 | 20 |
| 367 | 103.22 | wind | 7 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 421 | 103.39 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 426 | 103.40 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 429 | 103.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 444 | 103.46 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 457 | 103.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 14 |
| 462 | 103.49 | humidity | 60 | 43200 | < th | dose dependent | rect. | 15 | 17 |
| 469 | 103.51 | humidity | 80 | 43200 | < th | dose independent | sin | 5 | NA |
| 470 | 103.51 | wind | 7 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 486 | 103.54 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 497 | 103.57 | humidity | 60 | 43200 | > th | dose dependent | sin | 15 | NA |
| 520 | 103.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 551 | 103.71 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 581 | 103.80 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 624 | 103.91 | humidity | 60 | 43200 | < th | dose dependent | sin | 13 | NA |
| 651 | 103.97 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 654 | 103.97 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 656 | 103.98 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 657 | 103.98 | wind | 7 | 14400 | > th | dose independent | rect. | 19 | 20 |
| 659 | 103.98 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 11 |
| 758 | 104.18 | humidity | 80 | 43200 | > th | dose independent | sin | 5 | NA |
| 768 | 104.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 894 | 104.36 | wind | 9 | 14400 | < th | dose independent | sin | 13 | NA |
| 922 | 104.38 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 925 | 104.38 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 951 | 104.42 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 2 |