BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0402000 Os03g0402000|AK103200
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G54750.2  | chr5:22242080-22243477 FORWARD LENGTH=200          323   3e-89

>AT5G54750.2 | chr5:22242080-22243477 FORWARD LENGTH=200
          Length = 199

 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 176/200 (88%), Gaps = 14/200 (7%)

Query: 1   MPPLTGPKSGDALFGSVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQM------- 53
           M P+ GP+SGDA+F S++RVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQM       
Sbjct: 1   MAPV-GPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIY 59

Query: 54  ------GYNIGTRLVDEFLAKSNVSRCVDFKETADVIAKLGFKMFLGVTATVTNWDAEGT 107
                 GYNIG RL+DEFLAKS VSRCVDFKETA++IAK+GFKMFLGVTA+VT+WD++GT
Sbjct: 60  VDSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKVGFKMFLGVTASVTSWDSDGT 119

Query: 108 SCSFVLEDNPLVDFVELPDTCQGLQYCNVLSGVIRGALEMVSMKTEVTWVRDMLRGDDAY 167
            CS +LEDNPLVDFVELPDTCQGL YCNVLSGVIRGALEMVSMKTEVTW RD+LRGDDAY
Sbjct: 120 CCSIILEDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVTWTRDVLRGDDAY 179

Query: 168 EMRVKLTKQVPEEYPYKDDD 187
           E++VKL KQV EEYPYKDD+
Sbjct: 180 ELQVKLLKQVAEEYPYKDDE 199



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,991,144
Number of extensions: 146175
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)