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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0400200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0383) R2 : 0.177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.995 (0.105) R2dE : 0.208 R2E : 0.038
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.606 (0.0884) R2dN8 : 0.139 R2N8 : -0.031
σ : 0.699
deviance : 225.5
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C
peak time of C : --
E
wheather : temperature
threshold : 23.28
memory length : 2202
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.32 0.652 4.47 -0.707 0.483 0.945 2.38 1.81 0.406 6.23 23.14 2300 -- --
198.24 0.656 4.39 -0.029 0.489 0.984 2.44 -- 0.602 6.43 23.3 2330 -- --
205.63 0.668 4.47 -0.738 0.487 0.909 -- 1.99 0.353 6.65 23.2 2171 -- --
212.91 0.68 4.4 0.00233 0.487 0.995 -- -- 0.587 6.76 23.2 2318 -- --
218.01 0.688 4.49 -0.74 -- 0.945 -- 2 0.388 -- 23.17 2162 -- --
236.65 0.721 4.49 -0.454 0.524 -- 2.38 -- 0.167 6.89 -- -- -- --
250.46 0.741 4.49 -0.407 0.538 -- -- -- 0.164 7.73 -- -- -- --
225.49 0.699 4.41 0.0163 -- 1 -- -- 0.606 -- 23.3 2202 -- --
212.86 0.68 4.4 -- 0.497 0.98 -- -- 0.59 6.89 23.24 2318 -- --
266.09 0.762 4.5 -0.4 -- -- -- -- 0.171 -- -- -- -- --
254.83 0.747 4.48 -- 0.535 -- -- -- 0.209 7.78 -- -- -- --
225.5 0.699 4.41 -- -- 0.995 -- -- 0.606 -- 23.28 2202 -- --
270.31 0.767 4.49 -- -- -- -- -- 0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 191.04 temperature 30 270 < th dose dependent rect. 24 22
4 192.08 temperature 25 1440 < th dose dependent rect. 20 1
5 192.16 temperature 25 1440 < th dose dependent rect. 17 5
38 193.55 temperature 25 720 < th dose dependent rect. 17 19
78 194.26 temperature 30 270 < th dose dependent sin 6 NA
88 194.36 temperature 10 270 > th dose dependent sin 6 NA
99 194.46 temperature 25 1440 < th dose dependent sin 17 NA
129 194.70 temperature 25 720 < th dose dependent no NA NA
145 194.80 temperature 20 720 > th dose dependent rect. 21 13
169 194.98 temperature 10 270 > th dose dependent rect. 3 23
178 195.09 temperature 25 1440 < th dose dependent rect. 10 16
206 195.32 temperature 25 720 < th dose dependent rect. 6 23
225 195.49 temperature 10 720 > th dose dependent rect. 21 14
268 195.74 temperature 25 720 < th dose dependent rect. 8 23
310 195.99 temperature 15 270 > th dose dependent rect. 17 23
364 196.25 temperature 15 30 > th dose dependent rect. 21 23
399 196.38 temperature 25 4320 < th dose independent rect. 19 8
469 196.63 temperature 30 270 < th dose dependent sin 2 NA
470 196.63 temperature 15 4320 > th dose dependent rect. 21 1
504 196.75 temperature 30 720 < th dose dependent rect. 23 14
533 196.86 temperature 25 4320 < th dose independent rect. 20 1
641 197.29 temperature 20 4320 > th dose dependent rect. 23 1
674 197.42 temperature 30 720 < th dose dependent rect. 1 12
698 197.52 temperature 30 720 < th dose dependent rect. 2 10
702 197.53 temperature 25 4320 > th dose independent rect. 20 5
788 197.75 temperature 15 1440 > th dose dependent rect. 18 10
789 197.75 temperature 15 270 > th dose dependent rect. 14 23