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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0388800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Epoxide hydrolase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0659) R2 : 0.432
β1 : 1.54 (0.241) R2dD : 0.0554 R2D : 0.0263
β2 : 1.11 (0.163) R2dC : 0.0581 R2C : 0.044
β3 : 3.62 (0.281) R2dE : 0.251 R2E : 0.0113
β4 : 3.24 (0.708) R2dD*C : 0.0263 R2D*C : 0.0125
β5 : 14.3 (1.06) R2dD*E : 0.271 R2D*E : 0.0864
γ1 : 0.0363 (0.141) R2dN8 : 0.000117 R2N8 : -0.00975
σ : 1.21
deviance : 665.72
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_____
C
peak time of C : 15.9
E
wheather : humidity
threshold : 79.98
memory length : 1377
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 1.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
665.72 1.21 3.81 1.54 1.11 3.62 3.24 14.3 0.0363 15.9 79.98 1377 21.9 1.25
813.31 1.33 3.77 0.929 1.01 4.44 3.11 -- -0.0445 15.6 79 802 22.6 2.3
690.95 1.22 3.81 1.55 1.11 3.63 -- 14.1 0.0347 15.6 80 1302 21.8 1.3
796.53 1.31 3.71 1.03 1.05 6.7 -- -- -0.034 15.5 79.11 792 22.8 1.46
760.09 1.28 3.81 1.54 -- 3.63 -- 14.1 0.00896 -- 79.98 1301 21.7 1.35
1044.32 1.51 3.69 1.22 1.06 -- 2.46 -- -0.0459 15.2 -- -- -- --
1064.02 1.53 3.68 1.27 1.07 -- -- -- -0.0317 15.1 -- -- -- --
878.01 1.38 3.62 1.12 -- 4.82 -- -- 0.0605 -- 77 1345 21.1 1.78
825.04 1.34 3.69 -- 1.16 6.83 -- -- 0.0356 15.6 79 792 22.8 1.52
1128.88 1.57 3.68 1.22 -- -- -- -- -0.0594 -- -- -- -- --
1106.45 1.56 3.71 -- 1.04 -- -- -- -0.173 15.1 -- -- -- --
897.12 1.39 3.68 -- -- 6.27 -- -- -0.0536 -- 76.06 1268 21.4 1.71
1168.36 1.6 3.72 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 680.13 humidity 80 1440 < th dose independent rect. 22 1
3 700.11 wind 7 4320 < th dose independent rect. 18 5
7 706.28 wind 5 4320 > th dose dependent rect. 20 3
8 706.56 wind 5 4320 > th dose dependent rect. 18 5
9 708.15 humidity 90 1440 < th dose dependent rect. 23 8
20 713.15 wind 7 4320 > th dose independent rect. 18 4
21 713.73 humidity 80 1440 > th dose independent rect. 22 1
25 714.23 humidity 90 1440 < th dose dependent rect. 3 1
33 716.25 wind 5 1440 > th dose independent rect. 7 16
61 721.30 wind 5 1440 < th dose independent rect. 7 16
99 723.82 wind 9 4320 > th dose independent rect. 18 8
133 725.54 humidity 90 1440 < th dose dependent rect. 23 5
195 730.01 humidity 70 1440 > th dose dependent rect. 24 7
219 732.20 wind 5 1440 > th dose independent sin 23 NA
269 736.50 wind 5 1440 < th dose independent sin 23 NA
270 736.53 humidity 80 1440 < th dose dependent rect. 21 3
309 740.09 atmosphere 995 14400 > th dose independent rect. 7 13
316 740.40 atmosphere 995 14400 > th dose independent rect. 15 5
322 740.55 humidity 80 1440 < th dose dependent rect. 22 1
325 740.57 atmosphere 995 14400 > th dose independent rect. 12 8
335 740.74 atmosphere 995 14400 > th dose independent rect. 9 11
356 741.29 atmosphere 995 14400 < th dose independent rect. 15 3
418 742.29 atmosphere 995 14400 < th dose dependent rect. 15 4
425 742.43 atmosphere 995 14400 > th dose independent rect. 15 1
434 742.65 wind 5 1440 > th dose independent rect. 11 23
460 743.18 humidity 90 1440 < th dose dependent rect. 5 2
514 743.65 atmosphere 995 14400 > th dose independent rect. 17 3
522 743.99 wind 5 1440 > th dose independent rect. 21 23
559 745.26 wind 5 1440 > th dose independent no NA NA
596 746.71 humidity 70 1440 > th dose dependent rect. 24 4
727 749.84 wind 5 1440 > th dose independent rect. 15 23
730 749.97 atmosphere 995 14400 > th dose independent rect. 20 20
744 750.40 humidity 70 1440 > th dose dependent rect. 5 2
749 750.57 wind 5 1440 < th dose independent rect. 11 23
771 750.97 humidity 90 1440 < th dose dependent rect. 24 1
774 751.06 wind 5 1440 < th dose independent rect. 21 23
780 751.41 humidity 80 1440 < th dose independent rect. 21 10
784 751.62 wind 5 1440 > th dose independent rect. 17 23
805 752.61 wind 5 1440 < th dose independent no NA NA
815 752.91 atmosphere 995 14400 > th dose independent sin 22 NA
841 753.45 radiation 1 14400 < th dose dependent rect. 20 6
852 753.63 atmosphere 995 14400 < th dose independent sin 22 NA
873 754.16 temperature 20 720 < th dose independent rect. 18 1
886 754.52 atmosphere 995 14400 > th dose independent sin 4 NA
916 755.45 radiation 1 14400 < th dose dependent rect. 22 4
930 755.76 atmosphere 995 14400 < th dose dependent sin 23 NA
956 756.83 atmosphere 995 14400 < th dose independent sin 3 NA
966 757.19 wind 5 1440 > th dose dependent rect. 15 19
979 757.60 wind 5 1440 < th dose independent rect. 14 23
999 757.98 temperature 20 1440 > th dose independent rect. 18 1