Os03g0374100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hepatocellular carcinoma-associated antigen 59 family protein.
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Os03g0374100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hepatocellular carcinoma-associated antigen 59 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.08 | 0.205 | 11.7 | -0.22 | 0.161 | 0.477 | 0.139 | -0.355 | -0.0139 | 19.1 | 23.09 | 77 | -- | -- |
| 19.56 | 0.206 | 11.7 | -0.22 | 0.153 | 0.483 | 0.00704 | -- | -0.0164 | 19.1 | 24.6 | 69 | -- | -- |
| 19.12 | 0.204 | 11.7 | -0.222 | 0.162 | 0.484 | -- | -0.323 | -0.0131 | 19 | 23.73 | 77 | -- | -- |
| 19.55 | 0.206 | 11.7 | -0.217 | 0.158 | 0.474 | -- | -- | -0.0156 | 19.3 | 24.73 | 69 | -- | -- |
| 19.89 | 0.208 | 11.7 | -0.225 | -- | 0.499 | -- | -0.333 | -0.0139 | -- | 23.29 | 46 | -- | -- |
| 23.21 | 0.226 | 11.7 | -0.245 | 0.497 | -- | -0.186 | -- | -0.0467 | 23.3 | -- | -- | -- | -- |
| 23.36 | 0.226 | 11.7 | -0.237 | 0.498 | -- | -- | -- | -0.0459 | 23.3 | -- | -- | -- | -- |
| 20.39 | 0.21 | 11.7 | -0.223 | -- | 0.492 | -- | -- | -0.0147 | -- | 23.3 | 39 | -- | -- |
| 20.8 | 0.212 | 11.7 | -- | 0.166 | 0.491 | -- | -- | 0.00915 | 18.9 | 24.69 | 77 | -- | -- |
| 38.89 | 0.291 | 11.7 | -0.225 | -- | -- | -- | -- | -0.0411 | -- | -- | -- | -- | -- |
| 24.84 | 0.233 | 11.7 | -- | 0.496 | -- | -- | -- | -0.0195 | 23.3 | -- | -- | -- | -- |
| 21.7 | 0.217 | 11.7 | -- | -- | 0.495 | -- | -- | 0.00979 | -- | 23.7 | 41 | -- | -- |
| 40.22 | 0.296 | 11.7 | -- | -- | -- | -- | -- | -0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 18.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 19.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 6 | 19.02 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 7 | 19.02 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 8 | 19.05 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 17 | 19.11 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 18 | 19.12 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 17 |
| 22 | 19.12 | radiation | 20 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 24 | 19.13 | humidity | 60 | 10 | > th | dose dependent | sin | 0 | NA |
| 26 | 19.13 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 45 | 19.18 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 55 | 19.21 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 58 | 19.22 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 85 | 19.25 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 7 |
| 93 | 19.25 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 94 | 19.25 | humidity | 60 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 102 | 19.27 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 103 | 19.27 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 190 | 19.28 | humidity | 80 | 90 | > th | dose independent | sin | 0 | NA |
| 209 | 19.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 211 | 19.29 | humidity | 60 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 212 | 19.29 | humidity | 60 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 214 | 19.30 | radiation | 10 | 90 | > th | dose independent | sin | 1 | NA |
| 238 | 19.31 | radiation | 20 | 90 | < th | dose dependent | sin | 2 | NA |
| 250 | 19.32 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 310 | 19.36 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 312 | 19.36 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 5 |
| 314 | 19.36 | humidity | 80 | 1440 | < th | dose dependent | sin | 5 | NA |
| 319 | 19.36 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 330 | 19.37 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 335 | 19.38 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 21 |
| 347 | 19.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 358 | 19.39 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 371 | 19.40 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 391 | 19.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 425 | 19.44 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 444 | 19.46 | humidity | 70 | 1440 | > th | dose independent | sin | 6 | NA |
| 484 | 19.48 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 485 | 19.48 | humidity | 70 | 30 | > th | dose dependent | rect. | 1 | 20 |
| 563 | 19.52 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 595 | 19.54 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 11 |
| 615 | 19.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 631 | 19.55 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 658 | 19.57 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 22 |
| 659 | 19.57 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 23 |
| 665 | 19.57 | humidity | 60 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 676 | 19.58 | humidity | 90 | 10 | < th | dose dependent | sin | 0 | NA |
| 775 | 19.60 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 776 | 19.61 | humidity | 80 | 720 | < th | dose independent | sin | 0 | NA |
| 778 | 19.61 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 20 |
| 796 | 19.61 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 797 | 19.62 | humidity | 80 | 720 | > th | dose independent | sin | 0 | NA |
| 881 | 19.64 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 18 |
| 883 | 19.64 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 23 |
| 890 | 19.64 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 920 | 19.65 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 924 | 19.65 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 934 | 19.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 945 | 19.66 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 954 | 19.66 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 962 | 19.67 | humidity | 70 | 1440 | < th | dose independent | sin | 6 | NA |
| 967 | 19.67 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 1000 | 19.67 | humidity | 90 | 10 | < th | dose dependent | rect. | 19 | 23 |