BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0374100 Os03g0374100|AK066002
         (277 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02330.1  | chr1:462202-463521 REVERSE LENGTH=280              247   5e-66

>AT1G02330.1 | chr1:462202-463521 REVERSE LENGTH=280
          Length = 279

 Score =  247 bits (630), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 146/288 (50%), Positives = 180/288 (62%), Gaps = 24/288 (8%)

Query: 2   RKNFRKRNLEX------XXXXXXXXXXXXRRVALEEIKYMQKLRERKXXXXXXXXXXXXX 55
           ++NFRKR+ E                   RR+ALEE+K++QKLRERK             
Sbjct: 4   KRNFRKRSFEEEEEDNDVNKAAISEEEEKRRLALEEVKFLQKLRERKLGIPALSSTAQSS 63

Query: 56  XXXXXXXXXXXXXXXXXXXXXXXXXXEKEDLVLQDTFAQETAVTIEDPNMLRYVENEXXX 115
                                     EKE+LVLQDTFAQETAV IEDPNM++Y+E E   
Sbjct: 64  IGKVKPVEKTETEG------------EKEELVLQDTFAQETAVLIEDPNMVKYIEQELAK 111

Query: 116 X---XXXXXXXXXXXXXXXXXXXYTVPDHLKVRKKNSEESSTQWTTGIAEVQLPIEYKLR 172
                                  Y +PDHLKV+K++SEESSTQWTTGIAEVQLPIEYKL+
Sbjct: 112 KRGRNIDDAEEVENELKRVEDELYKIPDHLKVKKRSSEESSTQWTTGIAEVQLPIEYKLK 171

Query: 173 NIEETEAAKKMLQEKRLAGKTKSDANIPSSYNADFFHRGKDYTEKLRREHPELYKDQ-GS 231
           NIEETEAAKK+LQE+RL G+ KS+ +IPSSY+AD+F RGKDY EKLRREHPELYKD+ G 
Sbjct: 172 NIEETEAAKKLLQERRLMGRPKSEFSIPSSYSADYFQRGKDYAEKLRREHPELYKDRGGP 231

Query: 232 QANGTGGK-SMGGNHPDGAGAGR-REAATDELLLERFRKREKFRVMRR 277
           QA+G   K S   +  + A +G+ R+AATD+++LERFRKRE+ RVMRR
Sbjct: 232 QADGEAAKPSTSSSTNNNADSGKSRQAATDQIMLERFRKRERNRVMRR 279



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,445,590
Number of extensions: 169604
Number of successful extensions: 617
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)