Os03g0357500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0357500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.04 | 0.72 | 2.96 | 0.0282 | 0.145 | 3.57 | -1.32 | 4.89 | -0.0865 | 5.63 | 19.97 | 4 | 3.98 | 1.13 |
| 239.45 | 0.726 | 2.96 | 0.0686 | 0.143 | 3.57 | -0.984 | -- | -0.0766 | 5.94 | 19.9 | 5 | 3.97 | 1.14 |
| 238.88 | 0.725 | 2.96 | 0.0322 | 0.139 | 3.67 | -- | 3.9 | -0.0789 | 6.16 | 19.9 | 116 | 3.97 | 0.0275 |
| 241.82 | 0.729 | 2.96 | 0.0612 | 0.137 | 3.61 | -- | -- | -0.0723 | 6.21 | 19.9 | 5 | 3.97 | 1.14 |
| 239.87 | 0.725 | 2.96 | 0.0366 | -- | 3.75 | -- | 3.87 | -0.0749 | -- | 19.91 | 115 | 3.97 | 0.0278 |
| 263.13 | 0.76 | 2.97 | 0.0363 | 0.229 | -- | -1.08 | -- | -0.111 | 5.59 | -- | -- | -- | -- |
| 265.98 | 0.764 | 2.96 | 0.0311 | 0.223 | -- | -- | -- | -0.106 | 5.37 | -- | -- | -- | -- |
| 242.78 | 0.729 | 2.96 | 0.0658 | -- | 3.7 | -- | -- | -0.0686 | -- | 19.89 | 5 | 3.97 | 1.43 |
| 241.91 | 0.728 | 2.96 | -- | 0.139 | 3.62 | -- | -- | -0.0795 | 6.17 | 19.86 | 7 | 3.97 | 1.41 |
| 268.57 | 0.766 | 2.97 | 0.0387 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 266.01 | 0.763 | 2.96 | -- | 0.223 | -- | -- | -- | -0.11 | 5.36 | -- | -- | -- | -- |
| 242.9 | 0.728 | 2.96 | -- | -- | 3.69 | -- | -- | -0.0759 | -- | 19.9 | 5 | 3.97 | 0.964 |
| 268.61 | 0.765 | 2.97 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.34 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 238.51 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 20 |
| 17 | 240.63 | wind | 3.0 | 90 | > th | dose independent | rect. | 2 | 2 |
| 20 | 241.23 | wind | 5.0 | 10 | > th | dose independent | rect. | 18 | 5 |
| 26 | 241.93 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 39 | 242.53 | wind | 5.0 | 10 | > th | dose dependent | rect. | 20 | 2 |
| 47 | 242.99 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 68 | 243.86 | wind | 1.0 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 72 | 244.25 | wind | 5.0 | 10 | > th | dose independent | rect. | 18 | 11 |
| 77 | 244.48 | temperature | 20.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 116 | 246.40 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 2 |
| 121 | 246.65 | wind | 5.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 134 | 246.94 | humidity | 80.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 171 | 247.57 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 174 | 247.57 | wind | 7.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 179 | 247.57 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 282 | 248.89 | wind | 5.0 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 312 | 249.19 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 330 | 249.46 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 24 | 2 |
| 336 | 249.49 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 24 | 2 |
| 343 | 249.54 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 350 | 249.54 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 381 | 249.80 | wind | 5.0 | 10 | > th | dose independent | sin | 11 | NA |
| 392 | 249.88 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 416 | 250.14 | temperature | 20.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 419 | 250.16 | wind | 7.0 | 90 | > th | dose dependent | rect. | 2 | 7 |
| 443 | 250.59 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 451 | 250.69 | wind | 5.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 454 | 250.71 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 514 | 251.13 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 7 | 13 |
| 519 | 251.13 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 534 | 251.30 | wind | 7.0 | 90 | > th | dose independent | rect. | 2 | 7 |
| 538 | 251.34 | wind | 5.0 | 90 | > th | dose dependent | rect. | 19 | 3 |
| 546 | 251.38 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 3 |
| 567 | 251.38 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 602 | 251.50 | wind | 5.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 607 | 251.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 20 |
| 654 | 251.90 | wind | 7.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 733 | 252.43 | wind | 5.0 | 270 | < th | dose independent | rect. | 19 | 13 |
| 812 | 252.84 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 822 | 252.90 | temperature | 20.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 851 | 253.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 876 | 253.21 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 13 |
| 909 | 253.32 | wind | 5.0 | 10 | < th | dose independent | sin | 10 | NA |
| 920 | 253.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 965 | 253.54 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 2 |
| 966 | 253.54 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 4 |