Os03g0353600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SABRE.
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Os03g0353600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SABRE.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.13 | 0.323 | 8.31 | -0.129 | 0.466 | 0.407 | -0.621 | 2.1 | 0.128 | 23.4 | 19.7 | 5852 | -- | -- |
| 51.53 | 0.337 | 8.4 | -0.384 | 0.449 | -0.128 | -0.624 | -- | 0.0675 | 23.3 | 19.7 | 5852 | -- | -- |
| 48.78 | 0.325 | 8.31 | -0.107 | 0.47 | 0.414 | -- | 2.13 | 0.134 | 23.3 | 19.6 | 5881 | -- | -- |
| 51.57 | 0.334 | 8.39 | -0.175 | 0.49 | -0.385 | -- | -- | 0.115 | 23.3 | 14.31 | 13020 | -- | -- |
| 62.26 | 0.37 | 8.37 | -0.195 | -- | -0.202 | -- | 0.811 | 0.122 | -- | 19.5 | 5872 | -- | -- |
| 52.1 | 0.338 | 8.41 | -0.42 | 0.472 | -- | -0.638 | -- | 0.047 | 23.4 | -- | -- | -- | -- |
| 53.85 | 0.344 | 8.4 | -0.394 | 0.475 | -- | -- | -- | 0.0495 | 23.3 | -- | -- | -- | -- |
| 65.12 | 0.377 | 8.38 | -0.304 | -- | -0.282 | -- | -- | 0.0971 | -- | 19.5 | 5872 | -- | -- |
| 52.16 | 0.336 | 8.38 | -- | 0.489 | -0.455 | -- | -- | 0.156 | 23.2 | 15.7 | 24685 | -- | -- |
| 67.97 | 0.385 | 8.39 | -0.381 | -- | -- | -- | -- | 0.0541 | -- | -- | -- | -- | -- |
| 57.93 | 0.356 | 8.39 | -- | 0.471 | -- | -- | -- | 0.0933 | 23.3 | -- | -- | -- | -- |
| 66.09 | 0.379 | 8.39 | -- | -- | -0.454 | -- | -- | 0.126 | -- | 14.9 | 13063 | -- | -- |
| 71.81 | 0.396 | 8.38 | -- | -- | -- | -- | -- | 0.0964 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 2 | 45.25 | temperature | 20 | 90 | > th | dose dependent | sin | 12 | NA |
| 5 | 45.31 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 14 | 45.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 13 |
| 52 | 45.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 11 |
| 108 | 46.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 11 |
| 110 | 46.45 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 15 |
| 125 | 46.55 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 4 |
| 152 | 46.68 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 204 | 46.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 225 | 46.94 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 256 | 47.04 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 259 | 47.06 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 271 | 47.08 | temperature | 30 | 90 | < th | dose dependent | sin | 14 | NA |
| 289 | 47.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 293 | 47.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 462 | 47.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 467 | 47.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 491 | 47.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 648 | 47.46 | atmosphere | 995 | 720 | > th | dose independent | rect. | 24 | 21 |
| 748 | 47.52 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 784 | 47.54 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 803 | 47.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 878 | 47.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 893 | 47.60 | temperature | 25 | 270 | < th | dose independent | sin | 16 | NA |
| 914 | 47.61 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 994 | 47.65 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |