BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0353600 Os03g0353600|J043016A02
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58250.2  | chr1:21587317-21601373 REVERSE LENGTH=2656         188   8e-49
AT5G49680.2  | chr5:20176385-20188307 FORWARD LENGTH=2588         184   8e-48

>AT1G58250.2 | chr1:21587317-21601373 REVERSE LENGTH=2656
          Length = 2655

 Score =  188 bits (477), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 87/122 (71%), Positives = 99/122 (81%)

Query: 1    HQGRFLLAAGSGRVLVRSFHSIVHVGQEMFEKALGSSNVAIGETRPEMSWSRYEVSVMLE 60
            +Q  +      GRVL RSFHSI+ VG E+ E+ALG+ +V I E  PEM+W+R EVSVMLE
Sbjct: 1860 NQQNYFCYCLCGRVLARSFHSIMRVGVEVIEQALGTGSVKIPECSPEMTWTRMEVSVMLE 1919

Query: 61   HVQAHVAPTDVDPGAGIQWLPKIHRRSSEVKRTGALLERVFMPCQMYFRYTRHKGGNPEL 120
            HVQAHVAPTDVDPGAG+QWLPKI R S +VKRTGALLERVFMPC MYFRYTRHKGG P+L
Sbjct: 1920 HVQAHVAPTDVDPGAGLQWLPKIRRNSPKVKRTGALLERVFMPCDMYFRYTRHKGGTPDL 1979

Query: 121  KV 122
            KV
Sbjct: 1980 KV 1981



>AT5G49680.2 | chr5:20176385-20188307 FORWARD LENGTH=2588
          Length = 2587

 Score =  184 bits (468), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 97/121 (80%)

Query: 2    QGRFLLAAGSGRVLVRSFHSIVHVGQEMFEKALGSSNVAIGETRPEMSWSRYEVSVMLEH 61
             GRFLLAA SGRVL RSFHS+VHV  +M EKA  + N    E   +M+W+R EVS+MLEH
Sbjct: 1819 NGRFLLAAASGRVLARSFHSVVHVAYDMIEKAAQNENDHNPENGTDMTWTRMEVSMMLEH 1878

Query: 62   VQAHVAPTDVDPGAGIQWLPKIHRRSSEVKRTGALLERVFMPCQMYFRYTRHKGGNPELK 121
            VQAHVAPTDVDPGAG+QWLPKI R S + KRTGALLERVFMPC MYF+YTRHKG  P+LK
Sbjct: 1879 VQAHVAPTDVDPGAGVQWLPKIRRSSPKAKRTGALLERVFMPCDMYFQYTRHKGVTPDLK 1938

Query: 122  V 122
            V
Sbjct: 1939 V 1939



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,934,923
Number of extensions: 108217
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)