Os03g0352500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGR379Wp.
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Os03g0352500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AGR379Wp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.37 | 0.227 | 11.6 | 0.738 | 0.505 | -0.273 | -0.162 | 3.71 | 0.132 | 10.1 | 30 | 1520 | -- | -- |
| 24.73 | 0.232 | 11.7 | 0.0112 | 0.522 | 0.133 | -0.00885 | -- | -0.00106 | 9.47 | 32.7 | 13290 | -- | -- |
| 23.47 | 0.226 | 11.6 | 0.736 | 0.506 | -0.275 | -- | 3.73 | 0.132 | 10.1 | 30.01 | 1519 | -- | -- |
| 24.2 | 0.229 | 11.7 | -0.00734 | 0.517 | 0.199 | -- | -- | 0.00537 | 9.68 | 30.91 | 20070 | -- | -- |
| 38.84 | 0.29 | 11.6 | 0.742 | -- | -0.32 | -- | 3.85 | 0.123 | -- | 30 | 1523 | -- | -- |
| 25.54 | 0.237 | 11.7 | 0.0807 | 0.509 | -- | -0.197 | -- | 0.0673 | 9.95 | -- | -- | -- | -- |
| 25.69 | 0.237 | 11.7 | 0.0733 | 0.509 | -- | -- | -- | 0.067 | 9.98 | -- | -- | -- | -- |
| 39.88 | 0.294 | 11.7 | -0.0198 | -- | 0.219 | -- | -- | -0.016 | -- | 30.6 | 20186 | -- | -- |
| 23.96 | 0.228 | 11.7 | -- | 0.52 | 0.239 | -- | -- | -0.0209 | 10.1 | 30.9 | 20010 | -- | -- |
| 41.3 | 0.3 | 11.7 | 0.0671 | -- | -- | -- | -- | 0.0667 | -- | -- | -- | -- | -- |
| 25.83 | 0.238 | 11.7 | -- | 0.509 | -- | -- | -- | 0.0588 | 9.97 | -- | -- | -- | -- |
| 39.86 | 0.294 | 11.7 | -- | -- | 0.22 | -- | -- | -0.0327 | -- | 30.71 | 18916 | -- | -- |
| 41.42 | 0.3 | 11.7 | -- | -- | -- | -- | -- | 0.0592 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 23.14 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 10 | 23.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 16 | 23.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 17 | 23.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 42 | 23.33 | temperature | 30 | 1440 | > th | dose independent | sin | 4 | NA |
| 53 | 23.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 54 | 23.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 56 | 23.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 59 | 23.36 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 60 | 23.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 81 | 23.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 93 | 23.38 | temperature | 30 | 10 | < th | dose independent | rect. | 24 | 14 |
| 114 | 23.40 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 126 | 23.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 129 | 23.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 142 | 23.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 150 | 23.42 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 153 | 23.42 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 180 | 23.42 | temperature | 30 | 90 | < th | dose independent | rect. | 24 | 15 |
| 254 | 23.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 264 | 23.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 300 | 23.44 | temperature | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 302 | 23.44 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 390 | 23.46 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 402 | 23.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 407 | 23.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 408 | 23.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 427 | 23.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 437 | 23.47 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 439 | 23.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 463 | 23.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 466 | 23.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 471 | 23.49 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 475 | 23.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 508 | 23.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 514 | 23.51 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 515 | 23.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 566 | 23.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 594 | 23.54 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 611 | 23.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 613 | 23.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 624 | 23.55 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 714 | 23.55 | temperature | 25 | 4320 | > th | dose dependent | sin | 9 | NA |
| 771 | 23.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 804 | 23.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 863 | 23.59 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 14 |
| 881 | 23.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 888 | 23.60 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 911 | 23.60 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 1 |
| 980 | 23.62 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 1 |