BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0352500 Os03g0352500|AK062300
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G57300.2 | chr3:21199612-21207635 FORWARD LENGTH=1541 137 3e-33
AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056 57 8e-09
AT4G31900.1 | chr4:15431528-15438443 FORWARD LENGTH=1203 55 3e-08
AT2G25170.1 | chr2:10714411-10723763 FORWARD LENGTH=1385 53 1e-07
AT5G44800.1 | chr5:18083659-18092162 REVERSE LENGTH=2224 52 2e-07
AT5G66750.1 | chr5:26649050-26652869 FORWARD LENGTH=765 52 2e-07
AT2G02090.1 | chr2:523481-526884 FORWARD LENGTH=764 51 4e-07
AT3G06400.3 | chr3:1941066-1946700 FORWARD LENGTH=1058 50 9e-07
AT2G13370.1 | chr2:5544601-5555543 REVERSE LENGTH=1725 50 9e-07
AT5G05130.1 | chr5:1512173-1514918 FORWARD LENGTH=863 49 2e-06
AT5G18620.2 | chr5:6196190-6202058 REVERSE LENGTH=1073 49 3e-06
AT2G18760.1 | chr2:8129154-8133502 FORWARD LENGTH=1188 47 8e-06
>AT3G57300.2 | chr3:21199612-21207635 FORWARD LENGTH=1541
Length = 1540
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 85/111 (76%), Gaps = 4/111 (3%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKGKHVQDDHLMRQEDV 60
AMDR HRLGQTK+VTVYRLICK+T+EEKIL RA QKN VQ+LVM G HVQ D + DV
Sbjct: 1344 AMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTGGHVQGDDFLGAADV 1403
Query: 61 VSLLIDD---TQISHKLKEISMQAKDRLKKRRTKGIKVDKEGDLMLEDLDD 108
VSLL+DD Q+ K +E+ +Q KDR +K++TK I++D EGD LE+L+D
Sbjct: 1404 VSLLMDDAEAAQLEQKFRELPLQVKDR-QKKKTKRIRIDAEGDATLEELED 1453
>AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056
Length = 2055
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMK 45
A DR HR+GQT+EV +YRLI + TIEE IL++A QK + LV++
Sbjct: 1180 AQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQ 1224
>AT4G31900.1 | chr4:15431528-15438443 FORWARD LENGTH=1203
Length = 1202
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKGKHVQDDHL 54
AM R HRLGQT +V +YRLI K T+EE++++ K K ++ LV+ +H+ D L
Sbjct: 630 AMARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDEL 683
>AT2G25170.1 | chr2:10714411-10723763 FORWARD LENGTH=1385
Length = 1384
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 44
AM R HRLGQT +V +YRLI + TIEE+++Q K+K ++ LV+
Sbjct: 701 AMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV 744
>AT5G44800.1 | chr5:18083659-18092162 REVERSE LENGTH=2224
Length = 2223
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 34/44 (77%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM 44
AM+R HR+GQ+K + VYRL+ + ++EE+ILQ AK+K + +L +
Sbjct: 1111 AMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFV 1154
>AT5G66750.1 | chr5:26649050-26652869 FORWARD LENGTH=765
Length = 764
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVM-KGKHVQD----DHLM 55
AMDR HR+GQTK V VYRL +IE ++L+RA K ++ +V+ +G+ Q+ +
Sbjct: 630 AMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSSTPL 689
Query: 56 RQEDVVSLLIDD 67
+ED+++LL +D
Sbjct: 690 EEEDILALLKED 701
>AT2G02090.1 | chr2:523481-526884 FORWARD LENGTH=764
Length = 763
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMK-GKHVQDD 52
A DR HR+GQTK VT++RL+ K T++E I + AK+K + V++ G HV D+
Sbjct: 693 AEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDDN 745
>AT3G06400.3 | chr3:1941066-1946700 FORWARD LENGTH=1058
Length = 1057
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMK 45
A DR HR+GQ KEV V+R + IEEK+++RA +K A+ LV++
Sbjct: 596 AQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQ 640
>AT2G13370.1 | chr2:5544601-5555543 REVERSE LENGTH=1725
Length = 1724
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMK 45
AM R HR+GQ + V +YR + ++EE+IL+RAK+K + LV++
Sbjct: 1045 AMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQ 1089
>AT5G05130.1 | chr5:1512173-1514918 FORWARD LENGTH=863
Length = 862
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKGKHVQDDHLMRQEDV 60
AMDR HR+GQ +EV + R+I +++IEE++L+ ++K + K + +D+ + EDV
Sbjct: 797 AMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAFKRRQKKDEREVNVEDV 856
Query: 61 VSLL 64
V+L+
Sbjct: 857 VALM 860
>AT5G18620.2 | chr5:6196190-6202058 REVERSE LENGTH=1073
Length = 1072
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMK 45
A DR HR+GQ KEV V+R ++ IE K+++RA +K A+ LV++
Sbjct: 601 AQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVIQ 645
>AT2G18760.1 | chr2:8129154-8133502 FORWARD LENGTH=1188
Length = 1187
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 1 AMDRTHRLGQTKEVTVYRLICKDTIEEKILQRAKQKNAVQELVMKGKHVQDDHLMRQEDV 60
A +R R+GQ K+VTVYRLI + TIEEK+ R K+ + ++K Q + D+
Sbjct: 832 ARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNP--QQRRFFKARDM 889
Query: 61 VSLLI 65
L I
Sbjct: 890 KDLFI 894
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.126 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,225,738
Number of extensions: 163942
Number of successful extensions: 920
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 12
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 109 (46.6 bits)