Os03g0346700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0346700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.75 | 0.328 | 7.4 | 0.656 | 0.596 | 0.959 | 0.0305 | 0.153 | 0.283 | 8.6 | 29.5 | 76 | -- | -- |
| 48.78 | 0.325 | 7.4 | 0.684 | 0.596 | 0.96 | 0.0248 | -- | 0.289 | 8.6 | 29.61 | 75 | -- | -- |
| 48.75 | 0.325 | 7.4 | 0.658 | 0.596 | 0.958 | -- | 0.144 | 0.283 | 8.59 | 29.51 | 76 | -- | -- |
| 48.78 | 0.325 | 7.4 | 0.682 | 0.597 | 0.957 | -- | -- | 0.289 | 8.58 | 29.58 | 75 | -- | -- |
| 56.97 | 0.352 | 7.42 | 0.736 | -- | 1.37 | -- | 0.129 | 0.3 | -- | 41.16 | 442 | -- | -- |
| 61.05 | 0.366 | 7.44 | 0.446 | 0.687 | -- | -0.00041 | -- | 0.0971 | 6.78 | -- | -- | -- | -- |
| 61.05 | 0.366 | 7.44 | 0.446 | 0.687 | -- | -- | -- | 0.0971 | 6.78 | -- | -- | -- | -- |
| 56.98 | 0.352 | 7.41 | 0.758 | -- | 1.38 | -- | -- | 0.306 | -- | 39.33 | 443 | -- | -- |
| 59.61 | 0.362 | 7.43 | -- | 0.648 | 0.66 | -- | -- | 0.161 | 7.98 | 29.58 | 75 | -- | -- |
| 85.76 | 0.433 | 7.46 | 0.461 | -- | -- | -- | -- | 0.11 | -- | -- | -- | -- | -- |
| 66.3 | 0.381 | 7.46 | -- | 0.693 | -- | -- | -- | 0.0474 | 6.74 | -- | -- | -- | -- |
| 70.91 | 0.392 | 7.44 | -- | -- | 1.12 | -- | -- | 0.19 | -- | 42.92 | 409 | -- | -- |
| 91.38 | 0.446 | 7.47 | -- | -- | -- | -- | -- | 0.0593 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 3 | 45.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 6 |
| 16 | 46.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 18 | 46.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 20 | 46.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 23 | 46.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 45 | 46.89 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 49 | 46.96 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 50 | 46.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 58 | 47.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 83 | 47.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 100 | 47.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 103 | 47.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 113 | 47.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 120 | 47.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 132 | 47.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 13 |
| 137 | 47.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 154 | 47.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 12 |
| 163 | 47.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 267 | 47.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 297 | 47.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 315 | 47.92 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 353 | 48.00 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 384 | 48.10 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 19 |
| 417 | 48.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 455 | 48.26 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 18 |
| 464 | 48.28 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 467 | 48.28 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 15 |
| 503 | 48.33 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 11 |
| 523 | 48.38 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 545 | 48.43 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 557 | 48.47 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 9 |
| 585 | 48.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 681 | 48.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 744 | 48.82 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 749 | 48.83 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 765 | 48.85 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 776 | 48.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 787 | 48.89 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 825 | 48.93 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 859 | 48.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 886 | 49.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 894 | 49.05 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 918 | 49.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |