BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0346700 Os03g0346700|J013000O18
(194 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09060.3 | chr1:2921235-2925254 REVERSE LENGTH=945 72 3e-13
AT4G21430.1 | chr4:11407835-11412159 REVERSE LENGTH=928 51 3e-07
AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531 48 4e-06
AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536 47 5e-06
AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398 47 6e-06
>AT1G09060.3 | chr1:2921235-2925254 REVERSE LENGTH=945
Length = 944
Score = 71.6 bits (174), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 1 RRGGGTGMEXXXXXXXVPEELRCKRSDGKQWRCSAPSMPDKTVCEKHYVQ 50
R G G +P++LRCKRSDGKQWRC+A SM DKTVCEKHY+Q
Sbjct: 22 RSANGIGNGNGESIPGIPDDLRCKRSDGKQWRCTAMSMADKTVCEKHYIQ 71
>AT4G21430.1 | chr4:11407835-11412159 REVERSE LENGTH=928
Length = 927
Score = 51.2 bits (121), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 17 VPEELRCKRSDGKQWRCSAPSMPDKTVCEKHYVQ 50
VP+E RC RSDGKQWRC ++ K +CE H+ Q
Sbjct: 7 VPDEFRCNRSDGKQWRCKRRALEGKKMCESHHSQ 40
>AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531
Length = 530
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 18 PEELRCKRSDGKQWRCSAPSMPDKTVCEKH 47
PE RC+R+DGK+WRCS ++PD+ CE+H
Sbjct: 197 PEPGRCRRTDGKKWRCSRDAVPDQKYCERH 226
>AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536
Length = 535
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 18 PEELRCKRSDGKQWRCSAPSMPDKTVCEKH 47
PE RC+R+DGK+WRCS ++PD+ CE+H
Sbjct: 228 PEPGRCRRTDGKKWRCSRDAVPDQKYCERH 257
>AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398
Length = 397
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 18 PEELRCKRSDGKQWRCSAPSMPDKTVCEKH 47
PE RC+R+DGK+WRCS + PD CEKH
Sbjct: 82 PEPGRCRRTDGKKWRCSREAYPDSKYCEKH 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,066,478
Number of extensions: 76759
Number of successful extensions: 98
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 5
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)