Os03g0345100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rad9 family protein.
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Os03g0345100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rad9 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.03 | 0.385 | 9.21 | 1.03 | 1.35 | 0.465 | 0.126 | 1.11 | 0.815 | 0.149 | 21.7 | 1462 | -- | -- |
| 69.82 | 0.389 | 9.23 | 0.745 | 1.35 | 0.394 | 0.159 | -- | 0.765 | 0.129 | 21.9 | 1486 | -- | -- |
| 67.1 | 0.382 | 9.21 | 1.03 | 1.35 | 0.464 | -- | 1.11 | 0.815 | 0.149 | 21.7 | 1483 | -- | -- |
| 69.84 | 0.389 | 9.24 | 0.74 | 1.35 | 0.393 | -- | -- | 0.741 | 0.126 | 22.06 | 1503 | -- | -- |
| 149.14 | 0.569 | 9.27 | 0.647 | -- | 1.07 | -- | 0.369 | 0.518 | -- | 25.19 | 953 | -- | -- |
| 75.29 | 0.407 | 9.21 | 0.884 | 1.36 | -- | 0.133 | -- | 0.868 | 0.177 | -- | -- | -- | -- |
| 75.36 | 0.407 | 9.21 | 0.878 | 1.36 | -- | -- | -- | 0.867 | 0.174 | -- | -- | -- | -- |
| 147.99 | 0.567 | 9.27 | 0.599 | -- | 1.06 | -- | -- | 0.51 | -- | 25.13 | 912 | -- | -- |
| 72.88 | 0.398 | 9.27 | -- | 1.32 | 0.735 | -- | -- | 0.599 | 0.311 | 18.6 | 46575 | -- | -- |
| 191.29 | 0.646 | 9.19 | 0.922 | -- | -- | -- | -- | 0.888 | -- | -- | -- | -- | -- |
| 95.7 | 0.458 | 9.24 | -- | 1.37 | -- | -- | -- | 0.77 | 0.209 | -- | -- | -- | -- |
| 156.73 | 0.583 | 9.3 | -- | -- | 1.17 | -- | -- | 0.405 | -- | 24.94 | 938 | -- | -- |
| 213.72 | 0.682 | 9.21 | -- | -- | -- | -- | -- | 0.785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.05 | radiation | 20.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 2 | 62.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 20 |
| 4 | 62.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 18 | 63.01 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 39 | 63.71 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 50 | 63.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 53 | 63.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 54 | 64.03 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 4 |
| 64 | 64.04 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 66 | 64.07 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 86 | 64.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 94 | 64.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 5 |
| 95 | 64.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 100 | 64.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 103 | 64.63 | radiation | 10.0 | 90 | < th | dose independent | sin | 10 | NA |
| 106 | 64.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 21 |
| 108 | 64.70 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 111 | 64.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 113 | 64.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 115 | 64.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 116 | 64.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 117 | 64.72 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 123 | 64.79 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 138 | 64.86 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 10 | 21 |
| 139 | 64.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 170 | 65.05 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 171 | 65.05 | radiation | 30.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 184 | 65.06 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 203 | 65.11 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 207 | 65.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 3 |
| 218 | 65.14 | radiation | 1.0 | 30 | > th | dose dependent | sin | 10 | NA |
| 219 | 65.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 220 | 65.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 230 | 65.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 19 |
| 231 | 65.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 233 | 65.23 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 235 | 65.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 237 | 65.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 238 | 65.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 240 | 65.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 241 | 65.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 254 | 65.31 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 272 | 65.41 | temperature | 15.0 | 10 | > th | dose independent | rect. | 10 | 20 |
| 279 | 65.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 21 |
| 300 | 65.49 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 348 | 65.71 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 400 | 65.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 21 |
| 401 | 65.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 477 | 66.12 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 482 | 66.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 496 | 66.18 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 3 |
| 552 | 66.29 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 590 | 66.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 631 | 66.43 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 632 | 66.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 645 | 66.47 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 669 | 66.51 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 671 | 66.52 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 679 | 66.56 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 712 | 66.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 19 |
| 717 | 66.63 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 10 | 20 |
| 722 | 66.65 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 744 | 66.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 10 |
| 767 | 66.72 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 20 |
| 772 | 66.73 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 795 | 66.77 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 805 | 66.78 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 837 | 66.82 | humidity | 60.0 | 10 | > th | dose independent | rect. | 6 | 4 |
| 848 | 66.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 932 | 66.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 943 | 66.94 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 950 | 66.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 955 | 66.96 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 957 | 66.96 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 3 |
| 967 | 66.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 973 | 66.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 979 | 67.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |