BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0345100 Os03g0345100|AK065579
         (427 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05480.3  | chr3:1585383-1588238 FORWARD LENGTH=457            340   7e-94

>AT3G05480.3 | chr3:1585383-1588238 FORWARD LENGTH=457
          Length = 456

 Score =  340 bits (873), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 201/442 (45%), Positives = 258/442 (58%), Gaps = 48/442 (10%)

Query: 1   MSGGALRTFTRCVTCLARVGSDLVLQAHPAKLELHTLNSSRSAYASISLARDFFDEFXXX 60
           +SG AL+T +R + CLARVG++LV+QA P +L LHTLN+SRSAY  I+    FFD +   
Sbjct: 5   ISGNALKTLSRSIICLARVGNELVVQASPTQLALHTLNASRSAYQCITFQSSFFDVYTVS 64

Query: 61  XXXXXXX-------XXXXTPLQCSVLLKSASLPNPDAPKLQLTLHCL------------- 100
                             TPL  S+   S  LP+ DA K++ TL C              
Sbjct: 65  GPQAHFSVLLKAVCSVLRTPL-ASIDHMSVQLPDHDASKVKWTLQCYSAVLCKNLDVACF 123

Query: 101 ----NGVKKTYWIACSAESEVQTLALDRSNFSSRLAIRPRDLARLLSNFQSSLQELTVIA 156
               N +KKTYWI C+ E ++Q L+LDR  F S L + PR+L++LL NFQSSLQE+T+IA
Sbjct: 124 RPVHNSMKKTYWITCNVEPDIQHLSLDRGRFPSTLVMHPRNLSKLLGNFQSSLQEITIIA 183

Query: 157 TDPAAGLSNVGVDGEIEGKAVELRSYIDPTKDDCDTRLHTQLWIDPTEEFVEYVHSGDSV 216
           TD  +  S+     EI GKAVE RSY+DPTKD  D+ LHTQLWIDP+EEF++Y H+GD V
Sbjct: 184 TDQTSFPSDAA--SEIGGKAVEFRSYVDPTKDG-DSLLHTQLWIDPSEEFLQYTHAGDPV 240

Query: 217 DVTFGVKELKAFLTFCEGCEVDILLFFQKAGEPVLLVPKXXXXXXXXXXXXATLVLATML 276
           D+TF +KELKAFL FCEGCE DI LFF+KAGEP+L+ PK            ATLVLATML
Sbjct: 241 DITFSLKELKAFLAFCEGCEADIHLFFEKAGEPILMAPKFGLGDGSSSSFDATLVLATML 300

Query: 277 VSQLTDSSVAQQP----TTSAQRAEEPRVAATPPP-----VPENVSNHTKIWSELSGSAP 327
           VSQL +   A+ P    +T    AE+  V + P         E+ S+HT++WSELSG+A 
Sbjct: 301 VSQLQEGIPAEPPEAANSTGGHAAEQ--VGSRPQERSRQNASEHPSDHTRVWSELSGTAT 358

Query: 328 KSFEVNREKYTQKERNANSNALNDTSMLHSVNARYKPPVADNA----NDTMQPMQMDHLE 383
           KS  VN    T+    A      D   + ++      PV D A      + +P Q+DH E
Sbjct: 359 KS--VNG---TEDRPQAQGQPDLDIHRIRNMEISKGGPVGDTAPAAPPKSQRPTQIDHAE 413

Query: 384 EPPDVVSDNPRSQHHPSNWVGA 405
                V +   SQHHPSNWV A
Sbjct: 414 GSRVRVQNQSFSQHHPSNWVDA 435



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,592,456
Number of extensions: 328956
Number of successful extensions: 1081
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)