Os03g0343500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L22-2.
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Os03g0343500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L22-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.84 | 0.406 | 12.7 | -0.482 | 0.881 | 0.278 | 0.941 | -1.78 | -0.281 | 17.4 | 20.61 | 4208 | -- | -- |
| 77.57 | 0.41 | 12.7 | -0.388 | 0.888 | 0.703 | 1.01 | -- | -0.248 | 17.4 | 19.1 | 18449 | -- | -- |
| 77 | 0.409 | 12.7 | -0.502 | 0.887 | 0.283 | -- | -1.83 | -0.282 | 17.4 | 20.66 | 4156 | -- | -- |
| 80.19 | 0.417 | 12.7 | -0.47 | 0.896 | 0.733 | -- | -- | -0.24 | 17.4 | 18.1 | 21666 | -- | -- |
| 117.59 | 0.505 | 12.7 | -0.512 | -- | 0.189 | -- | -1.9 | -0.289 | -- | 21.1 | 4253 | -- | -- |
| 85.28 | 0.433 | 12.6 | 0.194 | 0.866 | -- | 1.07 | -- | -0.0365 | 17.5 | -- | -- | -- | -- |
| 88.09 | 0.44 | 12.6 | 0.191 | 0.873 | -- | -- | -- | -0.0316 | 17.4 | -- | -- | -- | -- |
| 120.02 | 0.51 | 12.6 | -0.476 | -- | 0.756 | -- | -- | -0.23 | -- | 16.74 | 23941 | -- | -- |
| 82.8 | 0.424 | 12.6 | -- | 0.88 | 0.559 | -- | -- | -0.179 | 17.2 | 17.7 | 15539 | -- | -- |
| 127.76 | 0.528 | 12.6 | 0.162 | -- | -- | -- | -- | -0.0531 | -- | -- | -- | -- | -- |
| 89.05 | 0.441 | 12.6 | -- | 0.869 | -- | -- | -- | -0.0529 | 17.4 | -- | -- | -- | -- |
| 121.9 | 0.514 | 12.6 | -- | -- | 0.489 | -- | -- | -0.134 | -- | 15.29 | 17499 | -- | -- |
| 128.45 | 0.529 | 12.6 | -- | -- | -- | -- | -- | -0.071 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.17 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 5 | 72.33 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 8 | 72.73 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 10 | 72.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 15 | 73.32 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 16 | 73.33 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 26 | 73.71 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 27 | 73.73 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 29 | 73.75 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 30 | 73.76 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 43 | 73.84 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 54 | 73.88 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 76 | 73.99 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 86 | 74.05 | temperature | 20.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 87 | 74.05 | temperature | 20.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 95 | 74.06 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 103 | 74.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 105 | 74.10 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 108 | 74.10 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 121 | 74.15 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 122 | 74.15 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 123 | 74.15 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 134 | 74.18 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 171 | 74.26 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 176 | 74.29 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 189 | 74.32 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 202 | 74.35 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 211 | 74.36 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 213 | 74.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 227 | 74.42 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 248 | 74.47 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 261 | 74.49 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 278 | 74.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 282 | 74.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 293 | 74.57 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 296 | 74.58 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 300 | 74.59 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 307 | 74.61 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 338 | 74.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 347 | 74.68 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 354 | 74.68 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 358 | 74.69 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 372 | 74.71 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 400 | 74.77 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 449 | 74.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 454 | 74.89 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 471 | 74.91 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 476 | 74.91 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 511 | 74.96 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 521 | 74.96 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 522 | 74.97 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 545 | 74.97 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 546 | 74.97 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 589 | 74.99 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 591 | 74.99 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 598 | 75.00 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 599 | 75.00 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 610 | 75.02 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 623 | 75.03 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 656 | 75.06 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 657 | 75.06 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 678 | 75.07 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 680 | 75.07 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 681 | 75.07 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 726 | 75.11 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 730 | 75.12 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 733 | 75.12 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 743 | 75.12 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 762 | 75.14 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 768 | 75.14 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 769 | 75.14 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 810 | 75.16 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 831 | 75.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 869 | 75.18 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 875 | 75.18 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 877 | 75.18 | atmosphere | 1005.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 885 | 75.18 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 899 | 75.19 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 901 | 75.19 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 912 | 75.19 | atmosphere | 1005.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 933 | 75.20 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 962 | 75.21 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 984 | 75.22 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 3 |