BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0343500 Os03g0343500|AK059599
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05560.1  | chr3:1614641-1615204 FORWARD LENGTH=125            167   1e-42
AT5G27770.1  | chr5:9836166-9837113 FORWARD LENGTH=125            143   2e-35
AT1G02830.1  | chr1:625145-625608 REVERSE LENGTH=128              119   3e-28

>AT3G05560.1 | chr3:1614641-1615204 FORWARD LENGTH=125
          Length = 124

 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 92/110 (83%), Gaps = 1/110 (0%)

Query: 22  VTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPF 81
           V+F IDC+KPVDDKIMEIASLEKFLQERIKV GGKAG LG+SVT++R+K+K+TVT+DG F
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVTITREKSKITVTADGQF 74

Query: 82  SXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 131
           S              HNVRDWLRVIA+NKDRN+YELRYFNIAENEGEEED
Sbjct: 75  SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEGEEED 124



>AT5G27770.1 | chr5:9836166-9837113 FORWARD LENGTH=125
          Length = 124

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/99 (69%), Positives = 81/99 (81%), Gaps = 1/99 (1%)

Query: 22  VTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPF 81
           V+F IDC+KPVDDKIMEIASLEKFLQERIKV GGKAG LG+SV+++R+K+K+TVT+DG F
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKV-GGKAGALGDSVSITREKSKITVTADGQF 74

Query: 82  SXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYF 120
           S              HNVRDWLRVIA+NKDRN+YELRYF
Sbjct: 75  SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113



>AT1G02830.1 | chr1:625145-625608 REVERSE LENGTH=128
          Length = 127

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 1/101 (0%)

Query: 22  VTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPF 81
           V+FVIDC+KPVDD I+EIA+LEKFLQERIKV G KAG LG SV+++R   K+ V ++  F
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRG-KAGALGNSVSITRYNGKINVNANSNF 76

Query: 82  SXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNI 122
           S              +N+RDWLRVIASNKD+NVYE+RYF I
Sbjct: 77  SKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRI 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,068,024
Number of extensions: 58590
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)