Os03g0340700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0340700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.46 | 0.237 | 11.7 | 0.258 | 0.228 | -0.43 | 0.383 | -0.29 | 0.307 | 23.9 | 24.09 | 15 | -- | -- |
| 25.5 | 0.235 | 11.7 | 0.301 | 0.228 | -0.462 | 0.431 | -- | 0.321 | 23.7 | 23.93 | 34 | -- | -- |
| 25.97 | 0.237 | 11.7 | 0.177 | 0.251 | -0.36 | -- | -0.665 | 0.295 | 0.555 | 24.11 | 11 | -- | -- |
| 26.24 | 0.239 | 11.7 | 0.28 | 0.226 | -0.446 | -- | -- | 0.316 | 0.338 | 24 | 14 | -- | -- |
| 28.48 | 0.249 | 11.7 | 0.252 | -- | -0.595 | -- | -0.479 | 0.323 | -- | 23.92 | 8 | -- | -- |
| 28.5 | 0.25 | 11.7 | 0.22 | 0.383 | -- | 0.458 | -- | 0.263 | 1.27 | -- | -- | -- | -- |
| 29.34 | 0.254 | 11.7 | 0.203 | 0.385 | -- | -- | -- | 0.26 | 1.49 | -- | -- | -- | -- |
| 28.61 | 0.249 | 11.7 | 0.314 | -- | -0.63 | -- | -- | 0.341 | -- | 23.97 | 8 | -- | -- |
| 28.19 | 0.247 | 11.7 | -- | 0.259 | -0.369 | -- | -- | 0.28 | 0.684 | 24.2 | 9 | -- | -- |
| 38.42 | 0.29 | 11.7 | 0.219 | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
| 30.43 | 0.258 | 11.7 | -- | 0.388 | -- | -- | -- | 0.238 | 1.51 | -- | -- | -- | -- |
| 31.12 | 0.26 | 11.7 | -- | -- | -0.582 | -- | -- | 0.298 | -- | 24.15 | 8 | -- | -- |
| 39.68 | 0.294 | 11.7 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 2 | 24.95 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 4 | 24.99 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 6 | 25.00 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 9 | 25.07 | wind | 5.0 | 90 | > th | dose independent | rect. | 13 | 1 |
| 15 | 25.11 | temperature | 20.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 20 | 25.19 | temperature | 20.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 38 | 25.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 48 | 25.34 | wind | 5.0 | 90 | > th | dose dependent | rect. | 12 | 2 |
| 57 | 25.38 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 58 | 25.39 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 62 | 25.40 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 69 | 25.44 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 78 | 25.47 | temperature | 30.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 82 | 25.48 | temperature | 30.0 | 10 | < th | dose dependent | sin | 22 | NA |
| 100 | 25.51 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 24 | 22 |
| 107 | 25.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 108 | 25.54 | temperature | 25.0 | 90 | < th | dose independent | rect. | 14 | 22 |
| 110 | 25.54 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 119 | 25.56 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 121 | 25.56 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 122 | 25.56 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 127 | 25.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 129 | 25.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 140 | 25.57 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 146 | 25.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 9 |
| 148 | 25.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 149 | 25.58 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 158 | 25.59 | humidity | 70.0 | 90 | < th | dose independent | rect. | 16 | 22 |
| 175 | 25.60 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 20 |
| 178 | 25.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 186 | 25.61 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 192 | 25.62 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 19 |
| 201 | 25.62 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 225 | 25.63 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 226 | 25.63 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 300 | 25.67 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 306 | 25.68 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 344 | 25.69 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 441 | 25.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 502 | 25.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 512 | 25.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 561 | 25.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 563 | 25.81 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 593 | 25.83 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 618 | 25.85 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 632 | 25.86 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 22 |
| 691 | 25.91 | humidity | 70.0 | 90 | > th | dose independent | sin | 21 | NA |
| 707 | 25.92 | humidity | 70.0 | 30 | > th | dose independent | rect. | 4 | 20 |
| 716 | 25.92 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 725 | 25.93 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 751 | 25.95 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 762 | 25.95 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 797 | 25.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 839 | 26.00 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 859 | 26.01 | humidity | 70.0 | 90 | > th | dose independent | rect. | 11 | 12 |
| 934 | 26.04 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 958 | 26.06 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 968 | 26.07 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 974 | 26.07 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 975 | 26.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 978 | 26.07 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 12 |