BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0340700 Os03g0340700|AK100470
(492 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16760.1 | chr3:5703213-5705080 FORWARD LENGTH=476 213 3e-55
AT5G09420.1 | chr5:2928316-2931750 FORWARD LENGTH=604 60 3e-09
AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278 57 2e-08
AT3G17970.1 | chr3:6148030-6151794 FORWARD LENGTH=590 57 3e-08
AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563 55 8e-08
AT4G32070.1 | chr4:15504662-15507097 REVERSE LENGTH=812 50 4e-06
AT5G20360.1 | chr5:6882121-6884630 REVERSE LENGTH=810 49 5e-06
AT5G12430.1 | chr5:4028475-4034086 REVERSE LENGTH=1166 49 6e-06
>AT3G16760.1 | chr3:5703213-5705080 FORWARD LENGTH=476
Length = 475
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 162/450 (36%), Positives = 211/450 (46%), Gaps = 54/450 (12%)
Query: 64 AWTHQPAKTTSWTHQXXXXXXXXXXXXXXTSMVGDIFGRSWSSAAPSSGLGIPQANNPXX 123
+WTHQPA S TSMVGDI G++W SA+ S +P
Sbjct: 57 SWTHQPAPKQSTIRSEIGSGP--------TSMVGDIHGKTWGSASGSGSGIGIVNKDPSL 108
Query: 124 XXXXXXXXXXXXXXXQPNAPLRSSAPQTYKXXXXXXXXSGSPFSMGGMASTLPKXXXXXX 183
+ N PL+++ P + S SP+SMG + +LPK
Sbjct: 109 FGDLVGSAIGQGKSSR-NVPLKNAPPVS------ASGSSKSPYSMGNLGDSLPKSGNSMK 161
Query: 184 XXXXXXXXXXXXRXXXXXXXXXXXXXXXXXGQKK----------------DPFGSIDPFA 227
K DPFGS+ F
Sbjct: 162 TGGGMGYSSNPSGFSGGYTSSGGFNANLGGPSMKNMAGGNLNGSGLPSNSDPFGSLVGFG 221
Query: 228 AKPGSMNAAKKANPVKPDQGFGAFQGVNSGGIAGLSGFQTADSGFGSFQSSGAVKPSS-- 285
+K K N + D FG FQGV++ G +G T + FG FQ+S + SS
Sbjct: 222 SKSSGSKPGKVNNNAQNDT-FGNFQGVSNLNSGGSTGTTTQINDFGGFQASKSNTFSSGG 280
Query: 286 -FTPLXXXXXXXXXXXXXNSGVDHLDSLFAST--TAAPTAVSNXXXXXXXXXXXXXWVDV 342
F +S D +F+++ +AAP W
Sbjct: 281 SFNASNVDFGVQPSGPQSSSANDDPLGMFSNSKPSAAPPT-----------PQTEDW--- 326
Query: 343 EADFGSGDSG-GAXXXXXXXXXXXXXXXASAAKSKGMDNYKGGQYADAIKWLSWAVVLIE 401
F S D G G+ A++AK+KG+DN + GQYADAIKWLSWAV+L++
Sbjct: 327 --GFESFDGGAGSTTELDGLPPPPPGVSATSAKNKGIDNQRQGQYADAIKWLSWAVILMD 384
Query: 402 KSGKYADIVEVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNVSVLVQRALLYESSEKYR 461
++G A EVLS+RAS YKEVGEYKKA+ADC+KVL+ DK NV++LVQRALLYES EKY+
Sbjct: 385 RAGDEAGSAEVLSTRASCYKEVGEYKKAVADCTKVLDHDKKNVTILVQRALLYESMEKYK 444
Query: 462 LGAEDLRLVLKIDPGNRLARSMIHRLNKMA 491
LGAEDLR+VLKIDPGNR+ARS +HRL KMA
Sbjct: 445 LGAEDLRMVLKIDPGNRIARSTVHRLTKMA 474
>AT5G09420.1 | chr5:2928316-2931750 FORWARD LENGTH=604
Length = 603
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 374 KSKGMDNYKGGQYADAIKWLSWAVVLIEKSGKYADIVEVLSSRASSYKEVGEYKKAIADC 433
K KG YKG Q+ A+ + + A+ L + Y +RA+++ E+ +++A DC
Sbjct: 492 KEKGNAAYKGKQWNKAVNFYTEAIKLNGANATY------YCNRAAAFLELCCFQQAEQDC 545
Query: 434 SKVLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKIDPGNRLARSMIHRLNK 489
+K + DK NV ++R ES +Y+ A D R L ++P N+ A+ RL K
Sbjct: 546 TKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRK 601
>AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278
Length = 277
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 370 ASAAKSKGMDNYKGGQYADAIKWLSWAVVLIEKSGKYADIVEVLS-SRASSYKEVGEYKK 428
A+ AK++G + G Y +A+ ++A+ L+++ + ++ + +R + ++G+ ++
Sbjct: 105 ANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELRSICYLNRGVCFLKLGKCEE 164
Query: 429 AIADCSKVLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKIDPGNRLARSMIHRLN 488
I +C+K LE + LV+RA +E E + DL+ +L++DP N AR I RL
Sbjct: 165 TIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDPSNDQARKGIRRLE 224
Query: 489 KMA 491
+A
Sbjct: 225 PLA 227
>AT3G17970.1 | chr3:6148030-6151794 FORWARD LENGTH=590
Length = 589
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 370 ASAAKSKGMDNYKGGQYADAIKWLSWAVVLIEKSGKYADIVEVLSSRASSYKEVGEYKKA 429
A AK KG +K + AI S A+ L + + Y S+RA++Y E+G + +A
Sbjct: 474 AEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATY------YSNRAAAYLELGGFLQA 527
Query: 430 IADCSKVLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKIDPGNRLARSMIHRLNK 489
DC+K + DK NV ++R E + ED R L ++P N+ A RL K
Sbjct: 528 EEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRK 587
Query: 490 M 490
Sbjct: 588 F 588
>AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563
Length = 562
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 370 ASAAKSKGMDNYKGGQYA-------DAIKWLSWAVVLIEKSGKYADIVEV---LSSRASS 419
AS K +G +KGG+Y+ A+K++ + E+ K A ++V L+ A
Sbjct: 400 ASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACK 459
Query: 420 YKEVGEYKKAIADCSKVLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKIDPGNRL 479
K + +YK+A C+KVLE + NV L +RA Y L D++ L+IDP NR
Sbjct: 460 LK-LKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNRE 518
Query: 480 ARSMIHRLNK 489
+ RL +
Sbjct: 519 VKLEQKRLKE 528
>AT4G32070.1 | chr4:15504662-15507097 REVERSE LENGTH=812
Length = 811
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 406 YADIVEVLSSRASSYKE--VGEYKKAIADCSKVLEKDKDNVSVLVQRALLYESSEKYRLG 463
+ D+ + +S AS Y + +GEY AI++C+ LE LV+R+ YE+ K
Sbjct: 85 HIDVAYLRTSMASCYMQMGLGEYPNAISECNLALEASPRYSKALVRRSRCYEALNKLDYA 144
Query: 464 AEDLRLVLKIDPGNRLARSMIHRLNKM 490
D R+VL ++PGN A + R+ K+
Sbjct: 145 FRDARIVLNMEPGNVSANEIFDRVKKV 171
>AT5G20360.1 | chr5:6882121-6884630 REVERSE LENGTH=810
Length = 809
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 380 NYKGG--QYADAIKWLSWAVVLIEKSGKYADIVEVLSSRASSYKEV--GEYKKAIADCSK 435
+Y G +Y +AIK L + ++ V ++ AS Y ++ GE+ KAI +C
Sbjct: 141 DYDGAMFKYGEAIKILP---------KDHVEVSHVRANVASCYMQLEPGEFAKAIHECDL 191
Query: 436 VLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKIDPGNRLARSMIHRLNK 489
L D+ L++RA YE+ K L D+ +V K+DP N +A ++ +L +
Sbjct: 192 ALSVTPDHNKALLKRARCYEALNKLDLALRDVCMVSKLDPKNPMASEIVEKLKR 245
>AT5G12430.1 | chr5:4028475-4034086 REVERSE LENGTH=1166
Length = 1165
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 374 KSKGMDNYKGGQYADAIKWLSWAVVLIEKSGKYADIVEVLSSRASSYKEVGEYKKAIADC 433
K+ G + ++ G++ +A++ + A+ +S + + +RA++YK +G++ AIADC
Sbjct: 883 KAAGNEAFQSGRHTEAVEHYTAALACNVESRPFTAVC--FCNRAAAYKALGQFSDAIADC 940
Query: 434 SKVLEKDKDNVSVLVQRALLYESSEKYRLGAEDLRLVLKI 473
S + D++ + +RA L+E Y A D+ + I
Sbjct: 941 SLAIALDQNYSKAISRRATLFEMIRDYGQAASDMERYVNI 980
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,987,821
Number of extensions: 225108
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 10
Length of query: 492
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,282,721
Effective search space: 3221978469
Effective search space used: 3221978469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)