Os03g0337500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2).
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Os03g0337500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.7 | 0.639 | 6.56 | 0.546 | 5.15 | -1.1 | 0.885 | 3.3 | -0.138 | 4.85 | 20.7 | 424 | 20.5 | 19.2 |
| 223.06 | 0.696 | 6.61 | 0.103 | 5.24 | -1.07 | 1.27 | -- | -0.189 | 4.81 | 20.4 | 385 | 20.3 | 20 |
| 185.46 | 0.634 | 6.58 | 0.504 | 5.25 | -1.09 | -- | 3.28 | -0.117 | 4.85 | 20.73 | 424 | 20.2 | 18.8 |
| 212.2 | 0.678 | 6.61 | -0.0505 | 5.17 | -1.08 | -- | -- | -0.245 | 4.67 | 20.58 | 414 | 19 | 21.1 |
| 473.91 | 1.01 | 6.67 | 0.822 | -- | -3.89 | -- | 3.1 | 0.0569 | -- | 14.2 | 832 | 23.5 | 20 |
| 264.03 | 0.762 | 6.72 | -0.503 | 5.1 | -- | -0.15 | -- | -0.553 | 4.48 | -- | -- | -- | -- |
| 264.09 | 0.761 | 6.72 | -0.502 | 5.1 | -- | -- | -- | -0.552 | 4.48 | -- | -- | -- | -- |
| 307.41 | 0.817 | 6.65 | -0.000917 | -- | -4.67 | -- | -- | -0.562 | -- | 6.889 | 665 | 2.82 | 16.5 |
| 209.46 | 0.674 | 6.65 | -- | 5.12 | -1.32 | -- | -- | -0.311 | 4.75 | 20.47 | 425 | 18.7 | 21.4 |
| 1653.9 | 1.9 | 6.75 | -0.303 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 270.73 | 0.77 | 6.7 | -- | 5.09 | -- | -- | -- | -0.496 | 4.48 | -- | -- | -- | -- |
| 254.32 | 0.743 | 6.76 | -- | -- | -5.54 | -- | -- | -0.47 | -- | 5.841 | 813 | 2.61 | 14 |
| 1656.33 | 1.9 | 6.75 | -- | -- | -- | -- | -- | -0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 4 | 196.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 13 | 197.74 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 18 |
| 17 | 197.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 32 | 199.00 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 34 | 199.06 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 134 | 202.19 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 137 | 202.28 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 160 | 202.88 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 19 |
| 184 | 203.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 210 | 204.05 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 216 | 204.21 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 17 |
| 248 | 204.90 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 254 | 205.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 271 | 205.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 273 | 205.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 285 | 205.33 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 286 | 205.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 294 | 205.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 321 | 205.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 324 | 205.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 352 | 206.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 366 | 206.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 10 |
| 400 | 206.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 432 | 206.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 488 | 206.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 550 | 207.09 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 560 | 207.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 565 | 207.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 573 | 207.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 606 | 207.37 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 628 | 207.51 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 645 | 207.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 655 | 207.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 666 | 207.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 877 | 208.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 913 | 208.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 915 | 208.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 917 | 208.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 932 | 208.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 954 | 208.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 967 | 208.64 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 21 |
| 973 | 208.66 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 984 | 208.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |